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Calcium in PDB 8g3o: N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules

Calcium Binding Sites:

The binding sites of Calcium atom in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules (pdb code 8g3o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules, PDB code: 8g3o:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 8g3o

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Calcium binding site 1 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca501

b:47.5
occ:1.00
 O G:HIS347 2.3 29.7 1.0
OD2 G:ASP324 2.3 87.7 1.0
O G:ASP293 2.4 52.1 1.0
O G:GLY345 2.4 55.5 1.0
O G:GLY297 2.5 50.4 1.0
C G:GLY345 3.4 62.4 1.0
C G:HIS347 3.5 33.8 1.0
CG G:ASP324 3.5 74.2 1.0
C G:GLY297 3.6 45.1 1.0
C G:ASP293 3.7 43.1 1.0
O G:GLU344 3.7 100.2 1.0
O G:GLY346 4.0 53.6 1.0
CA G:GLY345 4.0 75.7 1.0
CA G:GLY348 4.1 30.1 1.0
C G:GLY346 4.1 49.5 1.0
CA G:SER298 4.2 43.6 1.0
N G:GLY348 4.2 30.3 1.0
N G:SER298 4.2 45.9 1.0
OD1 G:ASP324 4.3 90.7 1.0
CA G:ASN294 4.3 50.2 1.0
N G:GLY346 4.4 68.6 1.0
N G:HIS347 4.4 42.3 1.0
CB G:ASP324 4.4 62.1 1.0
N G:ASN294 4.5 44.9 1.0
C G:ASN294 4.6 49.3 1.0
CA G:HIS347 4.6 40.8 1.0
O G:PRO326 4.7 55.2 1.0
C G:GLU344 4.7 92.7 1.0
CA G:ASP293 4.7 41.5 1.0
CA G:GLY346 4.7 64.1 1.0
N G:TRP295 4.7 42.5 1.0
CA G:GLY297 4.8 46.5 1.0
CB G:SER298 4.8 39.4 1.0
N G:GLY297 4.8 50.3 1.0
CB G:ASP293 4.8 48.4 1.0
N G:GLY345 4.9 88.5 1.0
OD1 G:ASP293 4.9 47.0 1.0
N G:ASP293 4.9 44.2 1.0

Calcium binding site 2 out of 5 in 8g3o

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Calcium binding site 2 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca502

b:173.2
occ:1.00
 OD2 G:ASP113 4.5 95.1 1.0
OD1 G:ASP113 4.5 83.7 1.0
OD1 J:ASP113 4.8 123.2 1.0
OD2 H:ASP113 4.9 142.9 1.0
CG G:ASP113 4.9 88.3 1.0

Calcium binding site 3 out of 5 in 8g3o

Go back to Calcium Binding Sites List in 8g3o
Calcium binding site 3 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca2000

b:47.5
occ:1.00
 OD2 H:ASP324 2.3 59.6 1.0
O H:HIS347 2.3 32.8 1.0
O H:GLY297 2.4 59.7 1.0
O H:ASP293 2.4 40.6 1.0
O H:GLY345 2.4 56.8 1.0
C H:GLY345 3.4 60.6 1.0
CG H:ASP324 3.5 55.4 1.0
C H:GLY297 3.5 52.1 1.0
C H:HIS347 3.6 34.3 1.0
C H:ASP293 3.6 39.3 1.0
O H:GLU344 3.8 90.8 1.0
O H:GLY346 4.0 38.2 1.0
CA H:GLY345 4.0 65.1 1.0
CA H:SER298 4.1 39.0 1.0
N H:SER298 4.1 46.0 1.0
CA H:GLY348 4.1 29.9 1.0
C H:GLY346 4.2 39.4 1.0
N H:GLY348 4.3 31.1 1.0
OD1 H:ASP324 4.3 65.2 1.0
CA H:ASN294 4.4 52.6 1.0
CB H:ASP324 4.4 48.0 1.0
N H:GLY346 4.4 55.7 1.0
N H:ASN294 4.4 41.7 1.0
N H:HIS347 4.5 39.0 1.0
C H:ASN294 4.6 58.8 1.0
CA H:ASP293 4.6 47.5 1.0
CA H:GLY297 4.7 49.5 1.0
CA H:HIS347 4.7 38.6 1.0
O H:PRO326 4.7 41.4 1.0
CB H:SER298 4.7 33.6 1.0
N H:GLY297 4.7 57.0 1.0
C H:GLU344 4.7 77.2 1.0
CB H:ASP293 4.7 50.8 1.0
N H:TRP295 4.8 57.5 1.0
CA H:GLY346 4.8 47.5 1.0
N H:ASP293 4.9 56.1 1.0
OD1 H:ASP293 4.9 37.8 1.0
N H:GLY345 4.9 82.4 1.0

Calcium binding site 4 out of 5 in 8g3o

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Calcium binding site 4 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca2000

b:28.2
occ:1.00
 OD2 B:ASP324 2.2 67.7 1.0
O B:HIS347 2.4 36.9 1.0
O B:GLY297 2.4 84.0 1.0
O B:ASP293 2.4 43.1 1.0
O B:GLY345 2.5 62.0 1.0
C B:GLY345 3.4 60.4 1.0
CG B:ASP324 3.5 60.2 1.0
C B:GLY297 3.5 72.1 1.0
C B:HIS347 3.6 38.9 1.0
C B:ASP293 3.6 40.9 1.0
O B:GLU344 3.8 122.5 1.0
CA B:GLY345 4.0 75.6 1.0
O B:GLY346 4.0 46.4 1.0
CA B:SER298 4.1 53.8 1.0
CA B:GLY348 4.1 28.4 1.0
N B:SER298 4.1 67.7 1.0
C B:GLY346 4.2 47.9 1.0
OD1 B:ASP324 4.3 65.5 1.0
N B:GLY348 4.3 33.5 1.0
CA B:ASN294 4.3 54.7 1.0
CB B:ASP324 4.4 54.5 1.0
N B:ASN294 4.4 45.0 1.0
N B:GLY346 4.5 57.8 1.0
N B:HIS347 4.5 49.5 1.0
C B:ASN294 4.6 66.5 1.0
CA B:ASP293 4.6 41.0 1.0
CA B:GLY297 4.7 61.8 1.0
CA B:HIS347 4.7 47.6 1.0
O B:PRO326 4.7 38.4 1.0
CB B:SER298 4.7 44.1 1.0
CB B:ASP293 4.7 43.6 1.0
N B:GLY297 4.7 64.5 1.0
C B:GLU344 4.8 97.6 1.0
N B:TRP295 4.8 61.5 1.0
CA B:GLY346 4.8 54.3 1.0
OD1 B:ASP293 4.8 47.6 1.0
N B:ASP293 4.8 39.9 1.0
N B:GLY345 4.9 91.8 1.0

Calcium binding site 5 out of 5 in 8g3o

Go back to Calcium Binding Sites List in 8g3o
Calcium binding site 5 out of 5 in the N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of N2 Neuraminidase of A/HONG_KONG/2671/2019 in Complex with 3 FNI9 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Ca2000

b:49.1
occ:1.00
 OD2 J:ASP324 2.2 86.8 1.0
O J:ASP293 2.4 70.4 1.0
O J:GLY297 2.4 75.2 1.0
O J:HIS347 2.4 59.1 1.0
O J:GLY345 2.4 82.5 1.0
CG J:ASP324 3.4 73.7 1.0
C J:GLY345 3.5 83.6 1.0
C J:GLY297 3.5 70.7 1.0
C J:HIS347 3.6 54.4 1.0
C J:ASP293 3.6 59.9 1.0
O J:GLU344 3.8 110.0 1.0
CA J:GLY348 4.1 53.4 1.0
CA J:SER298 4.1 52.6 1.0
O J:GLY346 4.1 64.8 1.0
CA J:GLY345 4.1 87.0 1.0
N J:SER298 4.2 66.4 1.0
C J:GLY346 4.2 68.2 1.0
OD1 J:ASP324 4.3 74.4 1.0
N J:GLY348 4.3 51.8 1.0
CB J:ASP324 4.3 69.6 1.0
CA J:ASN294 4.4 71.2 1.0
N J:ASN294 4.4 60.8 1.0
N J:GLY346 4.5 92.3 1.0
N J:HIS347 4.5 65.3 1.0
CA J:ASP293 4.6 53.0 1.0
C J:ASN294 4.6 69.4 1.0
CA J:GLY297 4.7 65.2 1.0
CA J:HIS347 4.7 60.7 1.0
N J:TRP295 4.7 74.8 1.0
CB J:ASP293 4.7 53.5 1.0
O J:PRO326 4.7 45.9 1.0
N J:GLY297 4.7 77.9 1.0
OD1 J:ASP293 4.8 63.0 1.0
CB J:SER298 4.8 50.7 1.0
CA J:GLY346 4.8 85.6 1.0
N J:ASP293 4.8 52.2 1.0
C J:GLU344 4.8 99.3 1.0
N J:GLY345 5.0 99.5 1.0

Reference:

C.Momont, H.V.Dang, F.Zatta, K.Hauser, G.Snell, D.Corti, M.S.Pizzuto. A Pan-Influenza Antibody Inhibiting Neuraminidase Via Receptor Mimicry Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06136-Y
Page generated: Fri Jul 19 09:07:02 2024

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