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Calcium in PDB 8g3q: N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules

Calcium Binding Sites:

The binding sites of Calcium atom in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules (pdb code 8g3q). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules, PDB code: 8g3q:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 8g3q

Go back to Calcium Binding Sites List in 8g3q
Calcium binding site 1 out of 5 in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca501

b:40.9
occ:1.00
 O E:HIS347 2.3 41.8 1.0
O E:ASP293 2.3 46.0 1.0
OD2 E:ASP324 2.3 56.6 1.0
O E:GLY345 2.3 51.2 1.0
O E:GLY297 2.4 45.5 1.0
C E:GLY345 3.4 43.9 1.0
C E:GLY297 3.5 44.2 1.0
CG E:ASP324 3.5 46.2 1.0
C E:HIS347 3.5 40.7 1.0
C E:ASP293 3.5 37.7 1.0
CA E:GLY348 3.9 38.7 1.0
CA E:SER298 4.1 42.9 1.0
CA E:GLY345 4.1 49.6 1.0
O E:GLU344 4.1 58.2 1.0
N E:SER298 4.1 45.1 1.0
O E:GLY346 4.1 41.0 1.0
N E:GLY348 4.2 39.1 1.0
C E:GLY346 4.2 41.9 1.0
CB E:ASP324 4.3 45.6 1.0
CA E:ASN294 4.3 43.4 1.0
OD1 E:ASP324 4.3 47.2 1.0
N E:ASN294 4.3 40.0 1.0
N E:HIS347 4.4 41.9 1.0
CA E:ASP293 4.5 43.1 1.0
N E:GLY346 4.5 39.8 1.0
N E:GLY297 4.5 49.5 1.0
CA E:GLY297 4.6 45.6 1.0
C E:ASN294 4.6 40.8 1.0
CB E:ASP293 4.6 43.0 1.0
OD1 E:ASP293 4.6 39.3 1.0
N E:ASP293 4.6 43.5 1.0
CA E:HIS347 4.6 42.1 1.0
O E:PRO326 4.8 52.8 1.0
CA E:GLY346 4.8 41.3 1.0
CB E:SER298 4.8 41.0 1.0
N E:TRP295 4.9 44.4 1.0
O E:ASN294 5.0 47.0 1.0

Calcium binding site 2 out of 5 in 8g3q

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Calcium binding site 2 out of 5 in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca502

b:172.1
occ:1.00
 OD2 E:ASP113 4.4 73.3 1.0
OD2 G:ASP113 4.5 82.2 1.0
OD2 H:ASP113 4.6 67.3 1.0
OD2 F:ASP113 4.6 72.1 1.0
OD1 F:ASP113 4.7 61.8 1.0
OD1 E:ASP113 4.7 57.3 1.0
OD1 G:ASP113 4.7 62.0 1.0
OD1 H:ASP113 4.9 53.8 1.0
CG E:ASP113 5.0 51.3 1.0

Calcium binding site 3 out of 5 in 8g3q

Go back to Calcium Binding Sites List in 8g3q
Calcium binding site 3 out of 5 in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca2000

b:36.2
occ:1.00
 O G:ASP293 2.3 34.8 1.0
O G:HIS347 2.3 40.7 1.0
OD2 G:ASP324 2.3 47.8 1.0
O G:GLY345 2.3 46.3 1.0
O G:GLY297 2.4 48.4 1.0
C G:GLY345 3.4 42.7 1.0
C G:HIS347 3.5 38.5 1.0
C G:GLY297 3.5 44.1 1.0
CG G:ASP324 3.5 43.9 1.0
C G:ASP293 3.5 36.5 1.0
CA G:GLY348 4.0 37.7 1.0
CA G:GLY345 4.1 46.9 1.0
CA G:SER298 4.1 38.4 1.0
O G:GLY346 4.1 39.6 1.0
N G:SER298 4.1 38.2 1.0
N G:GLY348 4.2 39.1 1.0
O G:GLU344 4.2 57.7 1.0
C G:GLY346 4.2 37.4 1.0
CA G:ASN294 4.3 42.5 1.0
CB G:ASP324 4.3 40.4 1.0
OD1 G:ASP324 4.3 44.8 1.0
N G:ASN294 4.3 38.4 1.0
N G:HIS347 4.4 37.0 1.0
CA G:ASP293 4.5 38.4 1.0
N G:GLY346 4.5 41.4 1.0
N G:GLY297 4.5 52.0 1.0
CA G:GLY297 4.5 49.8 1.0
C G:ASN294 4.6 40.3 1.0
CB G:ASP293 4.6 44.6 1.0
CA G:HIS347 4.6 38.6 1.0
OD1 G:ASP293 4.6 47.0 1.0
N G:ASP293 4.6 39.9 1.0
CA G:GLY346 4.8 41.4 1.0
O G:PRO326 4.8 44.1 1.0
CB G:SER298 4.9 37.6 1.0
N G:TRP295 4.9 41.7 1.0
O G:ASN294 5.0 43.3 1.0

Calcium binding site 4 out of 5 in 8g3q

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Calcium binding site 4 out of 5 in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca2000

b:40.6
occ:1.00
 O H:ASP293 2.2 45.9 1.0
O H:GLY345 2.3 42.7 1.0
O H:HIS347 2.3 43.4 1.0
OD2 H:ASP324 2.3 64.4 1.0
O H:GLY297 2.4 55.2 1.0
C H:GLY345 3.4 47.5 1.0
C H:GLY297 3.4 48.7 1.0
C H:ASP293 3.5 43.3 1.0
C H:HIS347 3.5 42.8 1.0
CG H:ASP324 3.5 57.9 1.0
CA H:GLY348 4.0 40.7 1.0
CA H:GLY345 4.0 48.9 1.0
CA H:SER298 4.1 48.1 1.0
N H:SER298 4.1 49.0 1.0
O H:GLY346 4.2 53.8 1.0
O H:GLU344 4.2 49.9 1.0
C H:GLY346 4.2 45.8 1.0
N H:GLY348 4.2 40.1 1.0
CA H:ASN294 4.2 40.9 1.0
N H:ASN294 4.3 42.1 1.0
CB H:ASP324 4.4 55.8 1.0
OD1 H:ASP324 4.4 65.4 1.0
N H:HIS347 4.4 47.2 1.0
N H:GLY346 4.4 48.2 1.0
CA H:ASP293 4.4 40.7 1.0
N H:GLY297 4.4 47.7 1.0
C H:ASN294 4.5 43.5 1.0
CA H:GLY297 4.5 52.1 1.0
OD1 H:ASP293 4.5 48.6 1.0
CB H:ASP293 4.6 41.3 1.0
CA H:HIS347 4.6 44.4 1.0
N H:ASP293 4.6 41.7 1.0
CA H:GLY346 4.7 49.8 1.0
N H:TRP295 4.8 43.6 1.0
O H:PRO326 4.8 56.4 1.0
CB H:SER298 4.9 42.2 1.0
O H:ASN294 4.9 45.8 1.0
CG H:ASP293 4.9 45.7 1.0

Calcium binding site 5 out of 5 in 8g3q

Go back to Calcium Binding Sites List in 8g3q
Calcium binding site 5 out of 5 in the N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of N2 Neuraminidase of A/Tanzania/205/2010 H3N2 in Complex with 3 FNI17 Fab Molecules within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca2000

b:40.8
occ:1.00
 OD2 F:ASP324 2.2 54.2 1.0
O F:ASP293 2.3 41.5 1.0
O F:HIS347 2.3 30.3 1.0
O F:GLY297 2.4 50.0 1.0
O F:GLY345 2.4 45.7 1.0
CG F:ASP324 3.4 48.8 1.0
C F:GLY297 3.5 47.5 1.0
C F:GLY345 3.5 38.8 1.0
C F:HIS347 3.5 34.8 1.0
C F:ASP293 3.5 39.5 1.0
CA F:GLY348 3.9 31.2 1.0
CA F:SER298 4.1 41.5 1.0
CA F:GLY345 4.1 43.7 1.0
N F:SER298 4.1 43.5 1.0
O F:GLY346 4.2 48.1 1.0
N F:GLY348 4.2 32.9 1.0
O F:GLU344 4.2 60.9 1.0
C F:GLY346 4.2 46.0 1.0
CB F:ASP324 4.3 41.2 1.0
OD1 F:ASP324 4.3 53.0 1.0
CA F:ASN294 4.3 40.7 1.0
N F:ASN294 4.4 42.1 1.0
CA F:ASP293 4.4 38.5 1.0
N F:HIS347 4.5 44.3 1.0
N F:GLY297 4.5 49.1 1.0
N F:GLY346 4.5 39.7 1.0
CA F:GLY297 4.5 50.6 1.0
CB F:ASP293 4.6 42.3 1.0
C F:ASN294 4.6 42.5 1.0
N F:ASP293 4.6 44.4 1.0
OD1 F:ASP293 4.6 46.6 1.0
CA F:HIS347 4.6 43.0 1.0
O F:PRO326 4.8 56.1 1.0
CA F:GLY346 4.8 41.9 1.0
CB F:SER298 4.8 43.5 1.0
N F:TRP295 4.9 46.3 1.0

Reference:

C.Momont, H.V.Dang, F.Zatta, K.Hauser, G.Snell, D.Corti, M.S.Pizzuto. A Pan-Influenza Antibody Inhibiting Neuraminidase Via Receptor Mimicry Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06136-Y
Page generated: Fri Jul 19 09:08:36 2024

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