Calcium in PDB 8g7z: Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation One

The binding sites of Calcium atom in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation One (pdb code 8g7z). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation One, PDB code: 8g7z:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation One


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation One within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca501 b:68.9 occ:1.00 OD1 C:ASN238 2.3 79.9 1.0 OD2 C:ASP137 2.4 96.6 1.0 O C:VAL154 2.7 94.4 1.0 O C:ILE236 2.9 75.9 1.0 OD1 C:ASP137 2.9 93.8 1.0 CG C:ASP137 3.0 94.5 1.0 CG C:ASN238 3.4 76.7 1.0 C C:VAL154 3.7 94.9 1.0 CB C:ASN238 4.2 76.2 1.0 C C:ILE236 4.2 74.5 1.0 O A:GLN370 4.3 66.3 1.0 N C:ASN238 4.4 72.6 1.0 CA C:GLY155 4.4 97.1 1.0 N C:GLY155 4.5 99.2 1.0 CB C:ASP137 4.5 91.9 1.0 ND2 C:ASN238 4.5 71.6 1.0 CA C:VAL154 4.5 95.3 1.0 CD1 C:LEU234 4.7 93.2 1.0 O A:GLY371 4.7 71.5 1.0 CA C:ASN238 4.9 77.6 1.0 CA C:PHE237 5.0 79.2 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation One


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation One within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca501 b:106.0 occ:1.00 OD1 D:ASN238 2.3 107.0 1.0 O D:VAL154 2.6 127.4 1.0 O D:ILE236 2.8 109.8 1.0 OD2 D:ASP137 2.9 124.2 1.0 OD1 D:ASP137 3.3 121.6 1.0 CG D:ASP137 3.5 123.0 1.0 CG D:ASN238 3.5 106.3 1.0 C D:VAL154 3.7 126.4 1.0 C D:ILE236 4.0 109.0 1.0 CA D:GLY155 4.4 127.1 1.0 CD1 D:LEU234 4.4 124.9 1.0 CB D:ASN238 4.4 107.5 1.0 ND2 D:ASN238 4.5 104.9 1.0 N D:GLY155 4.5 129.1 1.0 O B:GLN370 4.5 84.9 1.0 N D:ASN238 4.6 106.4 1.0 CA D:VAL154 4.6 125.6 1.0 O B:GLY371 4.6 93.8 1.0 N D:ILE236 4.8 109.1 1.0 CB D:LEU234 4.8 123.4 1.0 CA D:ILE236 4.8 108.7 1.0 CB D:ILE236 4.9 104.3 1.0 CB D:ASP137 5.0 123.6 1.0

R.Boyd, W.Wang. Cryo-Em Structure of Full Length Mouse Neuroligin-2 at 3.28 Angstroms Resolution To Be Published.