Calcium in PDB 8g80: Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Two

The binding sites of Calcium atom in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Two (pdb code 8g80). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Two, PDB code: 8g80:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Two


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Two within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1007 b:59.5 occ:1.00 OD1 C:ASN238 2.3 66.6 1.0 O C:VAL154 2.5 89.5 1.0 O C:ILE236 2.7 60.7 1.0 OD1 C:ASP137 2.9 84.5 1.0 OD2 C:ASP137 2.9 82.5 1.0 CG C:ASP137 3.2 83.8 1.0 C C:VAL154 3.5 87.1 1.0 CG C:ASN238 3.6 65.3 1.0 C C:ILE236 3.9 59.5 1.0 O A:GLN370 4.2 52.3 1.0 CA C:VAL154 4.3 86.7 1.0 N C:GLY155 4.4 92.2 1.0 CA C:GLY155 4.4 91.0 1.0 N C:ASN238 4.4 62.7 1.0 CB C:ASN238 4.5 62.7 1.0 ND2 C:ASN238 4.5 64.6 1.0 CB C:ASP137 4.6 83.9 1.0 O A:GLY371 4.7 52.7 1.0 CB C:VAL154 4.8 83.4 1.0 CA C:ILE236 4.8 56.6 1.0 N C:ILE236 4.8 57.7 1.0 N C:PHE237 4.8 66.8 1.0 CD1 C:LEU234 4.9 82.4 1.0 CA C:PHE237 4.9 64.6 1.0 CB C:LEU234 5.0 86.3 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Two


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Two within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1007 b:80.4 occ:1.00 OD1 D:ASN238 2.4 88.8 1.0 O D:ILE236 2.6 84.6 1.0 OD2 D:ASP137 2.9 106.2 1.0 O D:VAL154 3.0 110.7 1.0 OD1 D:ASP137 3.0 106.8 1.0 CG D:ASP137 3.3 107.0 1.0 CG D:ASN238 3.6 88.3 1.0 C D:ILE236 3.8 82.4 1.0 C D:VAL154 3.9 109.9 1.0 CD1 D:LEU234 4.4 100.4 1.0 CA D:GLY155 4.4 110.5 1.0 ND2 D:ASN238 4.5 85.7 1.0 CB D:ASN238 4.5 88.4 1.0 O B:GLN370 4.5 66.5 1.0 N D:GLY155 4.5 111.6 1.0 O B:GLY371 4.6 66.6 1.0 N D:ASN238 4.6 86.9 1.0 CA D:ILE236 4.6 81.2 1.0 CB D:ILE236 4.7 78.1 1.0 CA D:VAL154 4.8 110.9 1.0 CB D:LEU234 4.8 102.3 1.0 N D:ILE236 4.8 83.7 1.0 CB D:ASP137 4.8 106.8 1.0 N D:PHE237 4.8 92.5 1.0 CA D:PHE237 5.0 93.0 1.0

R.Boyd, W.Wang. Cryo-Em Structure of Full Length Mouse Neuroligin-2 at 3.28 Angstroms Resolution To Be Published.