Calcium in PDB 8g81: Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Three

The binding sites of Calcium atom in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Three (pdb code 8g81). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Three, PDB code: 8g81:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Three


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Three within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1007 b:92.8 occ:1.00 OD1 C:ASN238 2.4 104.1 1.0 O C:ILE236 2.6 101.3 1.0 O C:VAL154 2.6 123.2 1.0 OD2 C:ASP137 2.7 120.8 1.0 OD1 C:ASP137 2.8 124.3 1.0 CG C:ASP137 3.1 122.8 1.0 CG C:ASN238 3.5 98.2 1.0 C C:VAL154 3.7 123.6 1.0 C C:ILE236 3.8 98.0 1.0 N C:ASN238 4.1 102.1 1.0 CB C:ASN238 4.1 96.8 1.0 O A:GLN370 4.3 92.2 1.0 CA C:VAL154 4.4 123.7 1.0 N C:GLY155 4.6 132.5 1.0 CA C:PHE237 4.6 110.3 1.0 ND2 C:ASN238 4.6 93.3 1.0 CB C:ASP137 4.6 121.2 1.0 N C:PHE237 4.6 113.9 1.0 CA C:GLY155 4.7 132.8 1.0 O A:GLY371 4.7 103.4 1.0 CA C:ASN238 4.7 98.5 1.0 C C:PHE237 4.8 108.5 1.0 CA C:ILE236 4.8 91.4 1.0 CB C:VAL154 4.9 118.6 1.0 N C:ILE236 4.9 93.0 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Three


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Full Length Neuroligin-2 From Mouse Bound to Two Neurexin-1 Beta Conformation Three within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1007 b:132.9 occ:1.00 OD1 D:ASN238 2.4 139.1 1.0 OD2 D:ASP137 2.4 167.1 1.0 O D:VAL154 2.4 168.2 1.0 CG D:ASP137 3.2 168.5 1.0 OD1 D:ASP137 3.3 169.5 1.0 O D:ILE236 3.4 145.4 1.0 CG D:ASN238 3.5 139.1 1.0 C D:VAL154 3.6 168.1 1.0 CA D:GLY155 4.1 173.1 1.0 N D:GLY155 4.3 173.0 1.0 CD1 D:LEU234 4.3 162.3 1.0 ND2 D:ASN238 4.4 136.0 1.0 CB D:ASN238 4.4 139.6 1.0 O B:GLN370 4.5 110.8 1.0 C D:ILE236 4.5 144.1 1.0 CA D:VAL154 4.6 168.6 1.0 CB D:ASP137 4.6 167.7 1.0 O B:GLY371 4.6 120.6 1.0 N D:ASN238 4.9 141.0 1.0 CB D:LEU234 5.0 164.7 1.0

R.Boyd, W.Wang. Cryo-Em Structure of Full Length Mouse Neuroligin-2 at 3.28 Angstroms Resolution To Be Published.