Atomistry » Calcium » PDB 8fyo-8gsw » 8gqa
Atomistry »
  Calcium »
    PDB 8fyo-8gsw »
      8gqa »

Calcium in PDB 8gqa: Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Analog MSLADELTAW21

Protein crystallography data

The structure of Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Analog MSLADELTAW21, PDB code: 8gqa was solved by Y.Nakashima, H.Morita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.27 / 2.29
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 128.033, 128.033, 171.026, 90, 90, 90
R / Rfree (%) 18.4 / 20.8

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Analog MSLADELTAW21 (pdb code 8gqa). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Analog MSLADELTAW21, PDB code: 8gqa:

Calcium binding site 1 out of 1 in 8gqa

Go back to Calcium Binding Sites List in 8gqa
Calcium binding site 1 out of 1 in the Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Analog MSLADELTAW21


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Analog MSLADELTAW21 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:45.4
occ:1.00
OE2 A:GLU44 2.2 47.8 1.0
NE2 A:HIS261 2.3 36.1 1.0
OD1 A:ASN87 2.3 42.5 1.0
O A:HOH607 2.3 41.3 1.0
NE2 A:HIS259 2.4 34.2 1.0
O A:HOH711 2.4 38.6 1.0
CE1 A:HIS259 3.1 36.6 1.0
CE1 A:HIS261 3.2 42.2 1.0
CG A:ASN87 3.3 41.8 1.0
CD A:GLU44 3.3 49.5 1.0
CD2 A:HIS261 3.4 38.9 1.0
CD2 A:HIS259 3.5 32.0 1.0
ND2 A:ASN87 3.6 41.3 1.0
OE1 A:GLU44 3.7 54.3 1.0
O B:HOH103 3.8 48.5 1.0
O A:GLY293 4.2 38.4 1.0
CD2 A:HIS88 4.3 42.5 1.0
ND1 A:HIS259 4.3 35.4 1.0
ND1 A:HIS261 4.3 45.9 1.0
OD2 A:ASP11 4.4 44.5 1.0
CA A:GLY293 4.5 37.7 1.0
CG A:HIS261 4.5 44.0 1.0
CG A:GLU44 4.5 44.8 1.0
CG A:HIS259 4.5 34.0 1.0
CB A:ASN87 4.6 38.4 1.0
NE2 A:HIS295 4.8 50.8 1.0
N A:ASN87 4.8 34.9 1.0
CE1 A:HIS295 4.8 50.2 1.0
NE2 A:HIS88 4.8 45.0 1.0
C A:GLY293 4.8 39.8 1.0
O B:PHE20 4.9 85.1 1.0

Reference:

Y.Nakashima, H.Morita. X-Ray Crystallographic Analysis of Lasso Peptide Epimerase; Mslh To Be Published.
Page generated: Fri Jul 19 09:15:48 2024

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy