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Calcium in PDB 8gqb: Crystal Structure of Lasso Peptide Epimerase Mslh D11A Mutant

Protein crystallography data

The structure of Crystal Structure of Lasso Peptide Epimerase Mslh D11A Mutant, PDB code: 8gqb was solved by Y.Nakashima, H.Morita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.94 / 2.41
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 127.115, 127.115, 170.648, 90, 90, 90
R / Rfree (%) 19.6 / 22.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Lasso Peptide Epimerase Mslh D11A Mutant (pdb code 8gqb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Lasso Peptide Epimerase Mslh D11A Mutant, PDB code: 8gqb:

Calcium binding site 1 out of 1 in 8gqb

Go back to Calcium Binding Sites List in 8gqb
Calcium binding site 1 out of 1 in the Crystal Structure of Lasso Peptide Epimerase Mslh D11A Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Lasso Peptide Epimerase Mslh D11A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:77.0
occ:1.00
OD1 A:ASN87 2.4 55.8 1.0
OE1 A:GLU44 2.4 69.2 1.0
O A:HOH601 2.5 107.9 1.0
O A:HOH686 2.5 67.9 1.0
NE2 A:HIS261 2.5 56.9 1.0
NE2 A:HIS259 2.7 45.4 1.0
OE2 A:GLU44 2.9 68.6 1.0
CD A:GLU44 2.9 65.1 1.0
CG A:ASN87 3.3 47.8 1.0
CE1 A:HIS261 3.3 59.5 1.0
CE1 A:HIS259 3.4 45.7 1.0
ND2 A:ASN87 3.5 47.9 1.0
CD2 A:HIS261 3.7 57.4 1.0
CD2 A:HIS259 3.9 43.9 1.0
CD2 A:HIS88 4.0 46.0 1.0
O A:HOH701 4.0 65.2 1.0
O A:GLY293 4.2 40.1 1.0
CG A:GLU44 4.2 54.5 1.0
NE2 A:HIS88 4.4 49.9 1.0
ND1 A:HIS261 4.5 59.2 1.0
ND1 A:HIS259 4.7 44.4 1.0
CB A:ASN87 4.7 44.9 1.0
CE1 A:HIS295 4.7 43.0 0.5
CG A:HIS261 4.7 58.5 1.0
CA A:GLY293 4.8 39.6 1.0
N A:ASN87 4.9 45.7 1.0
CG A:HIS259 4.9 43.6 1.0
C A:GLY293 5.0 40.2 1.0

Reference:

Y.Nakashima, H.Morita. X-Ray Crystallographic Analysis of Lasso Peptide Epimerase; Mslh To Be Published.
Page generated: Fri Jul 19 09:16:14 2024

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