Calcium in PDB 8guv: Leca From Pseudomonas Aeruginosa in Complex with Tolcapone (Cas: 134308-13-7)

Protein crystallography data

The structure of Leca From Pseudomonas Aeruginosa in Complex with Tolcapone (Cas: 134308-13-7), PDB code: 8guv was solved by S.Kuhaudomlarp, E.Siebs, A.Varrot, A.Imberty, A.Titz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.84 / 1.32
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 57.65, 164.626, 50.105, 90, 90, 90
R / Rfree (%) 19.9 / 22.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Leca From Pseudomonas Aeruginosa in Complex with Tolcapone (Cas: 134308-13-7) (pdb code 8guv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Leca From Pseudomonas Aeruginosa in Complex with Tolcapone (Cas: 134308-13-7), PDB code: 8guv:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 8guv

Go back to Calcium Binding Sites List in 8guv
Calcium binding site 1 out of 2 in the Leca From Pseudomonas Aeruginosa in Complex with Tolcapone (Cas: 134308-13-7)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Leca From Pseudomonas Aeruginosa in Complex with Tolcapone (Cas: 134308-13-7) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:18.1
occ:1.00
O A:THR104 2.3 17.4 1.0
O A:TYR36 2.4 17.3 1.0
OD1 A:ASN108 2.4 15.8 1.0
OD1 A:ASN107 2.4 18.1 1.0
O7 A:TCW302 2.4 22.7 1.0
O8 A:TCW302 2.4 21.1 1.0
OD2 A:ASP100 2.4 16.9 1.0
C2 A:TCW302 3.3 22.9 1.0
C1 A:TCW302 3.3 23.8 1.0
C A:TYR36 3.4 17.2 1.0
CG A:ASP100 3.4 18.3 1.0
C A:THR104 3.4 17.8 1.0
CG A:ASN107 3.5 19.2 1.0
CG A:ASN108 3.5 15.4 1.0
OG1 A:THR104 3.5 21.0 1.0
OD1 A:ASP100 3.8 18.9 1.0
ND2 A:ASN107 3.8 19.8 1.0
CB A:THR104 3.9 19.8 1.0
ND2 A:ASN108 3.9 15.0 1.0
CA A:TYR36 3.9 16.8 1.0
CB A:TYR36 4.1 17.0 1.0
CA A:THR104 4.3 19.6 1.0
N A:TYR105 4.4 18.4 1.0
CA A:TYR105 4.4 17.7 1.0
N A:GLY37 4.5 16.4 1.0
C3 A:TCW302 4.6 25.4 1.0
N A:ASN108 4.6 17.1 1.0
C6 A:TCW302 4.7 25.8 1.0
CA A:GLY37 4.8 17.3 1.0
CB A:ASP100 4.8 16.7 1.0
CB A:ASN108 4.8 15.6 1.0
C A:ASN107 4.8 17.6 1.0
C A:TYR105 4.8 17.1 1.0
CB A:ASN107 4.8 17.9 1.0
N A:ASN107 4.9 17.7 1.0
CA A:ASN108 4.9 16.7 1.0

Calcium binding site 2 out of 2 in 8guv

Go back to Calcium Binding Sites List in 8guv
Calcium binding site 2 out of 2 in the Leca From Pseudomonas Aeruginosa in Complex with Tolcapone (Cas: 134308-13-7)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Leca From Pseudomonas Aeruginosa in Complex with Tolcapone (Cas: 134308-13-7) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca301

b:10.8
occ:1.00
O B:THR104 2.3 11.9 1.0
O B:TYR36 2.3 11.6 1.0
OD1 B:ASN107 2.4 11.2 1.0
O7 B:TCW302 2.4 12.8 1.0
O8 B:TCW302 2.4 13.4 1.0
OD1 B:ASN108 2.4 10.0 1.0
OD2 B:ASP100 2.5 10.3 1.0
C1 B:TCW302 3.3 14.7 1.0
C2 B:TCW302 3.3 13.5 1.0
C B:TYR36 3.3 11.7 1.0
CG B:ASN107 3.4 11.8 1.0
C B:THR104 3.4 11.3 1.0
OG1 B:THR104 3.5 12.3 1.0
CG B:ASN108 3.5 9.9 1.0
CG B:ASP100 3.5 9.8 1.0
CB B:THR104 3.8 12.4 1.0
ND2 B:ASN107 3.8 13.6 1.0
OD1 B:ASP100 3.9 9.9 1.0
CA B:TYR36 3.9 11.1 1.0
ND2 B:ASN108 4.0 10.0 1.0
CB B:TYR36 4.1 11.6 1.0
CA B:THR104 4.2 12.3 1.0
O B:HOH468 4.3 18.3 1.0
N B:GLY37 4.4 11.6 1.0
N B:TYR105 4.4 10.6 1.0
CA B:TYR105 4.5 10.8 1.0
N B:ASN108 4.6 10.3 1.0
C3 B:TCW302 4.6 14.7 1.0
C6 B:TCW302 4.6 16.1 1.0
CA B:GLY37 4.7 12.6 1.0
C B:ASN107 4.8 10.6 1.0
CB B:ASN108 4.8 10.0 1.0
CB B:ASN107 4.8 11.5 1.0
N B:ASN107 4.8 10.8 1.0
C B:TYR105 4.8 11.0 1.0
CB B:ASP100 4.9 10.0 1.0
CA B:ASN108 4.9 10.3 1.0

Reference:

E.Siebs, S.Kuhaudomlarp, E.Shanina, A.Varrot, P.Da Silva Fiqueiredo Celestino Gomes, C.Lerner, U.Grether, C.Rademacher, D.Rognan, A.Imberty, A.Titz. Leca From Pseudomonas Aeruginosa in Complex with Tolcapone (Cas: 134308-13-7) To Be Published.
Page generated: Wed Jul 26 13:32:55 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy