Calcium in PDB 8gz0: Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus

The structure of Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus, PDB code: 8gz0 was solved by I.Yuvaraj, K.Sekar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.27 / 2.22
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	90.01, 90.01, 140.671, 90, 90, 120
R / Rfree (%)	17.4 / 21.3

The binding sites of Calcium atom in the Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus (pdb code 8gz0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus, PDB code: 8gz0:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:17.8 occ:1.00 OD2 A:ASP40 2.2 17.7 1.0 OE2 A:GLU170 2.4 14.1 1.0 O A:THR171 2.4 17.4 1.0 OG B:SER25 2.4 16.3 1.0 OE1 A:GLU29 2.4 17.9 1.0 O B:ILE24 2.4 15.4 1.0 OE2 A:GLU29 2.5 18.3 1.0 CD A:GLU29 2.8 17.9 1.0 CG A:ASP40 3.4 18.2 1.0 C B:ILE24 3.4 16.0 1.0 CD A:GLU170 3.5 15.0 1.0 CB B:SER25 3.5 15.3 1.0 C A:THR171 3.5 18.3 1.0 CA B:SER25 3.6 14.9 1.0 N B:SER25 3.9 15.3 1.0 CB A:ASP40 4.0 17.8 1.0 O A:HOH382 4.1 14.5 1.0 CG A:GLU170 4.1 15.0 1.0 N A:THR171 4.3 17.0 1.0 CG A:GLU29 4.3 18.2 1.0 N A:THR172 4.4 18.8 1.0 CA A:THR172 4.4 19.5 1.0 OD1 A:ASP40 4.4 18.8 1.0 OE1 A:GLU170 4.4 15.1 1.0 CA A:THR171 4.5 18.4 1.0 O A:HOH343 4.7 11.6 1.0 N B:ILE24 4.7 18.3 1.0 CA B:ILE24 4.7 16.5 1.0 OG1 A:THR172 4.7 18.0 1.0 CG2 A:THR171 4.8 21.1 1.0 N A:GLU29 5.0 16.0 1.0

Calcium binding site 2 out of 4 in the Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:16.6 occ:1.00 OD1 A:ASP97 2.2 15.6 1.0 O A:HOH348 2.3 15.6 1.0 O A:GLY98 2.3 14.3 1.0 O A:ALA103 2.3 16.5 1.0 O A:GLY101 2.4 17.8 1.0 OD1 A:ASP95 2.4 14.2 1.0 OD2 A:ASP95 2.6 14.1 1.0 CG A:ASP95 2.9 13.9 1.0 CG A:ASP97 3.4 17.0 1.0 C A:GLY98 3.4 14.5 1.0 C A:ALA103 3.4 17.4 1.0 C A:GLY101 3.5 18.6 1.0 N A:ALA103 3.7 18.4 1.0 N A:GLY98 3.8 14.8 1.0 CA A:ALA103 4.0 18.1 1.0 C A:ASP97 4.0 16.1 1.0 OD2 A:ASP97 4.0 17.2 1.0 CA A:GLY98 4.1 14.2 1.0 C A:PRO102 4.1 19.0 1.0 CB A:ALA103 4.2 17.7 1.0 N A:PRO102 4.3 19.1 1.0 CA A:PRO102 4.3 19.2 1.0 N A:GLY101 4.4 18.7 1.0 CB A:ASP95 4.4 13.3 1.0 O A:ASP97 4.4 16.3 1.0 CA A:GLY101 4.4 19.3 1.0 CB A:ASP97 4.5 17.2 1.0 N A:PRO99 4.5 15.5 1.0 N A:ASP97 4.5 16.9 1.0 CA A:ASP97 4.6 16.5 1.0 N A:SER104 4.6 16.9 1.0 O A:PRO102 4.8 19.2 1.0 CA A:PRO99 4.8 16.1 1.0 O A:HOH373 5.0 17.5 1.0 CA A:SER104 5.0 16.8 1.0

Calcium binding site 3 out of 4 in the Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:14.3 occ:1.00 OD2 B:ASP40 2.3 13.8 1.0 OE2 B:GLU170 2.4 15.1 1.0 O A:ILE24 2.4 13.1 1.0 O B:THR171 2.4 16.8 1.0 OE1 B:GLU29 2.5 17.1 1.0 OG A:SER25 2.5 12.8 1.0 OE2 B:GLU29 2.6 19.3 1.0 CD B:GLU29 2.9 17.8 1.0 C A:ILE24 3.4 13.2 1.0 CG B:ASP40 3.4 15.1 1.0 CB A:SER25 3.5 12.2 1.0 CD B:GLU170 3.5 15.7 1.0 C B:THR171 3.5 16.8 1.0 CA A:SER25 3.6 12.3 1.0 N A:SER25 3.9 12.1 1.0 CB B:ASP40 4.0 15.1 1.0 O B:HOH359 4.1 11.2 1.0 CG B:GLU170 4.1 15.4 1.0 N B:THR171 4.3 15.9 1.0 CA B:THR172 4.3 17.0 1.0 N B:THR172 4.4 17.0 1.0 CG B:GLU29 4.4 17.5 1.0 O A:HOH301 4.4 17.7 1.0 OD1 B:ASP40 4.5 16.1 1.0 OE1 B:GLU170 4.5 15.4 1.0 CA B:THR171 4.5 17.1 1.0 OG1 B:THR172 4.7 15.3 1.0 CA A:ILE24 4.7 13.9 1.0 N A:ILE24 4.7 15.1 1.0 CG2 B:THR171 4.8 20.8 1.0 CA B:GLY28 5.0 15.3 1.0 N B:GLU29 5.0 16.4 1.0

Calcium binding site 4 out of 4 in the Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Hypothetical Protein TTHA1873 with Phosphate From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca202 b:24.1 occ:1.00 OD1 B:ASP97 2.3 22.2 1.0 O B:HOH370 2.3 17.0 1.0 O B:GLY98 2.3 19.5 1.0 O B:ALA103 2.4 24.5 1.0 OD1 B:ASP95 2.4 21.5 1.0 O B:GLY101 2.5 23.7 1.0 OD2 B:ASP95 2.6 20.6 1.0 CG B:ASP95 2.8 21.3 1.0 C B:GLY98 3.4 20.1 1.0 C B:ALA103 3.4 25.9 1.0 CG B:ASP97 3.4 23.9 1.0 C B:GLY101 3.5 25.5 1.0 N B:ALA103 3.7 26.7 1.0 N B:GLY98 3.8 21.4 1.0 CA B:ALA103 4.0 26.9 1.0 CA B:GLY98 4.1 20.0 1.0 OD2 B:ASP97 4.1 24.8 1.0 C B:PRO102 4.1 27.1 1.0 C B:ASP97 4.1 22.1 1.0 CB B:ALA103 4.3 27.0 1.0 CB B:ASP95 4.3 20.6 1.0 N B:PRO102 4.4 26.6 1.0 N B:GLY101 4.4 25.1 1.0 CA B:PRO102 4.4 26.9 1.0 O B:HOH395 4.4 38.5 1.0 CA B:GLY101 4.5 26.1 1.0 O B:HOH345 4.5 24.4 1.0 O B:ASP97 4.5 22.3 1.0 N B:PRO99 4.5 19.9 1.0 CB B:ASP97 4.6 24.4 1.0 N B:SER104 4.6 26.8 1.0 N B:ASP97 4.6 23.5 1.0 CA B:ASP97 4.6 23.4 1.0 O B:PRO102 4.7 28.2 1.0 CA B:PRO99 4.8 20.9 1.0 O B:HOH358 4.9 17.5 1.0 CA B:SER104 5.0 26.0 1.0

I.Yuvaraj, K.C.Santosh, K.Sekar. Structure of Hypothetical Protein TTHA1873 From Thermus Thermophilus at 1.78 Angstroms Resolution To Be Published.