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Calcium in PDB 8h7p: Crystal Structure of Aqualigase Bound with Suc-Aapf

Enzymatic activity of Crystal Structure of Aqualigase Bound with Suc-Aapf

All present enzymatic activity of Crystal Structure of Aqualigase Bound with Suc-Aapf:
3.4.21.62;

Protein crystallography data

The structure of Crystal Structure of Aqualigase Bound with Suc-Aapf, PDB code: 8h7p was solved by H.Li, M.Z.Ma, L.J.Zhang, L.Dai, C.-C.Chen, R.-T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.06 / 1.82
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.578, 71.68, 40.804, 90, 114.74, 90
R / Rfree (%) 13.5 / 18.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Aqualigase Bound with Suc-Aapf (pdb code 8h7p). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Aqualigase Bound with Suc-Aapf, PDB code: 8h7p:

Calcium binding site 1 out of 1 in 8h7p

Go back to Calcium Binding Sites List in 8h7p
Calcium binding site 1 out of 1 in the Crystal Structure of Aqualigase Bound with Suc-Aapf


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Aqualigase Bound with Suc-Aapf within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:8.8
occ:1.00
O A:VAL81 2.3 8.2 1.0
O A:LEU75 2.3 10.7 1.0
OD1 A:ASP41 2.3 9.2 1.0
O A:ILE79 2.4 11.6 1.0
OD2 A:ASP41 2.4 9.9 1.0
OD1 A:ASN77 2.4 10.1 1.0
OE1 A:GLN2 2.5 13.0 1.0
CG A:ASP41 2.7 9.8 1.0
CG A:ASN77 3.4 9.2 1.0
CD A:GLN2 3.4 13.4 1.0
C A:VAL81 3.5 8.6 1.0
C A:LEU75 3.5 10.9 1.0
C A:ILE79 3.6 11.0 1.0
N A:VAL81 3.7 9.1 1.0
ND2 A:ASN77 3.8 8.3 1.0
CG A:GLN2 3.9 12.8 1.0
C A:GLY80 4.1 9.4 1.0
N A:ASN77 4.1 10.4 1.0
CB A:ASP41 4.2 9.8 1.0
CA A:VAL81 4.2 9.1 1.0
N A:LEU75 4.3 9.6 1.0
CG1 A:ILE79 4.3 10.7 1.0
CA A:LEU75 4.4 10.0 1.0
CA A:GLY80 4.4 9.9 1.0
N A:ILE79 4.4 10.9 1.0
N A:GLY80 4.5 10.1 1.0
N A:ASN76 4.5 11.3 1.0
N A:LEU82 4.5 8.7 1.0
CA A:ILE79 4.6 10.7 1.0
CB A:GLN2 4.6 13.1 1.0
CA A:ASN76 4.6 12.0 1.0
NE2 A:GLN2 4.6 12.4 1.0
CB A:ASN77 4.7 9.8 1.0
O A:GLY80 4.7 9.6 1.0
C A:ASN76 4.7 11.6 1.0
CA A:LEU82 4.7 8.7 1.0
CB A:LEU75 4.7 9.8 1.0
CA A:ASN77 4.8 10.2 1.0
O A:ASN77 4.8 10.3 1.0
C A:ALA74 4.8 9.3 1.0
C A:ASN77 4.8 10.3 1.0
CB A:ALA74 4.9 9.2 1.0
CA A:ASP41 5.0 9.7 1.0

Reference:

H.Li, M.Z.Ma, L.J.Zhang, L.Dai, C.-C.Chen, R.-T.Guo. Crystal Structure of Aqualigase Bound with Suc-Aapf To Be Published.
Page generated: Thu Dec 28 01:39:50 2023

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