Calcium in PDB 8h9z: Annexin A5 Protein Mutant

The structure of Annexin A5 Protein Mutant, PDB code: 8h9z was solved by Z.C.Hua, W.Tang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.90 / 1.42
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	69.328, 134.651, 79.807, 90, 90, 90
R / Rfree (%)	22.9 / 26.5

The binding sites of Calcium atom in the Annexin A5 Protein Mutant (pdb code 8h9z). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Annexin A5 Protein Mutant, PDB code: 8h9z:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in the Annexin A5 Protein Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Annexin A5 Protein Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:99.2 occ:1.00 CA A:CA402 2.5 75.2 1.0 CG A:GLU107 2.8 37.6 1.0 O A:THR105 3.0 21.0 1.0 N A:GLU107 3.1 20.4 1.0 CB A:GLU107 3.1 23.7 1.0 O A:HOH537 3.5 37.6 1.0 CD A:GLU107 3.6 65.1 1.0 CA A:GLU107 3.7 20.9 1.0 OE1 A:GLU107 3.8 41.9 1.0 C A:THR105 4.2 22.7 1.0 C A:ASN106 4.2 19.0 1.0 O A:HOH667 4.2 50.5 1.0 CA A:ASN106 4.3 24.4 1.0 OE2 A:GLU107 4.5 47.9 1.0 N A:ASN106 4.7 18.5 1.0 N A:LYS108 4.7 17.4 1.0 C A:GLU107 4.7 18.1 1.0

Calcium binding site 2 out of 8 in the Annexin A5 Protein Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Annexin A5 Protein Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:75.2 occ:1.00 CA A:CA401 2.5 99.2 1.0 O A:HOH788 3.3 34.3 1.0 CB A:GLU107 3.6 23.7 1.0 N A:LYS108 4.1 17.4 1.0 N A:GLU107 4.1 20.4 1.0 CG A:GLU107 4.2 37.6 1.0 OE1 A:GLU107 4.3 41.9 1.0 CA A:GLU107 4.3 20.9 1.0 C A:GLU107 4.5 18.1 1.0 CD A:GLU107 4.7 65.1 1.0 CA A:LYS108 5.0 18.6 1.0

Calcium binding site 3 out of 8 in the Annexin A5 Protein Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Annexin A5 Protein Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca403 b:104.5 occ:1.00 CB A:GLU120 2.8 43.1 1.0 CG A:GLU120 3.5 51.0 1.0 CA A:GLU120 3.8 32.8 1.0 C A:GLU120 4.1 30.9 1.0 O A:GLU120 4.2 23.8 1.0 CD A:GLU120 4.8 52.8 1.0 N A:GLU121 4.9 24.6 1.0

Calcium binding site 4 out of 8 in the Annexin A5 Protein Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Annexin A5 Protein Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca404 b:65.0 occ:1.00 OD2 A:ASP303 2.5 37.5 1.0 OG1 A:THR264 2.6 21.6 1.0 O A:MET259 2.7 49.0 1.0 CG A:ASP303 2.9 36.2 1.0 CB A:ASP303 3.2 30.6 1.0 O A:GLY263 3.5 36.5 1.0 CA A:MET259 3.5 24.7 1.0 C A:MET259 3.5 31.0 1.0 CB A:MET259 3.7 22.9 1.0 CB A:THR264 3.7 22.0 1.0 OD1 A:ASP303 3.9 33.2 1.0 CA A:THR264 4.0 22.6 1.0 CG2 A:THR264 4.0 20.9 1.0 CG A:MET259 4.2 18.1 1.0 C A:GLY263 4.2 26.1 1.0 CA A:ASP303 4.5 21.8 1.0 N A:THR264 4.5 28.9 1.0 O A:HOH550 4.7 23.8 1.0 N A:LYS260 4.8 23.8 1.0 O A:ASP303 4.8 23.2 1.0 O A:ALA258 4.9 21.4 1.0 N A:MET259 4.9 18.9 1.0 O A:GLY261 4.9 40.2 1.0

Calcium binding site 5 out of 8 in the Annexin A5 Protein Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Annexin A5 Protein Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca405 b:70.7 occ:1.00 CA A:GLY306 3.0 18.9 1.0 N A:ASP307 3.3 18.4 1.0 C A:GLY306 3.6 14.3 1.0 OD2 A:ASP307 4.1 23.5 1.0 CG A:ASP307 4.2 23.9 1.0 O A:HOH720 4.2 20.0 1.0 N A:GLY306 4.3 16.7 1.0 O A:HOH606 4.3 32.7 1.0 O A:HOH715 4.3 32.3 1.0 OD1 A:ASP307 4.5 27.2 1.0 CA A:ASP307 4.5 17.5 1.0 CB A:ASP307 4.6 15.4 1.0 O A:GLY306 4.8 15.7 1.0

Calcium binding site 6 out of 8 in the Annexin A5 Protein Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Annexin A5 Protein Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca406 b:135.2 occ:1.00 CB A:CYS321 3.4 112.5 1.0 N A:CYS321 3.8 42.2 1.0 CA A:CYS321 3.9 82.6 1.0 C A:CYS321 4.0 74.6 1.0 C A:ASP320 4.7 32.7 1.0 SG A:CYS321 4.8 130.9 1.0 O A:CYS321 4.8 60.5 1.0

Calcium binding site 7 out of 8 in the Annexin A5 Protein Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Annexin A5 Protein Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca407 b:65.6 occ:1.00 O A:HOH689 2.8 29.4 1.0 CB A:GLU36 2.9 27.7 1.0 N A:GLU36 3.0 20.2 1.0 OE1 A:GLU36 3.0 56.2 1.0 OD1 A:ASP307 3.0 27.2 1.0 CA A:GLU36 3.0 23.4 1.0 O A:HOH606 3.4 32.7 1.0 C A:GLU35 3.9 21.1 1.0 CD A:GLU36 3.9 50.3 1.0 CG A:ASP307 3.9 23.9 1.0 CG A:GLU36 4.0 34.1 1.0 CE A:LYS310 4.0 39.5 1.0 CB A:GLU35 4.2 20.1 1.0 CD A:LYS310 4.2 35.1 1.0 OD2 A:ASP307 4.3 23.5 1.0 CD2 A:LEU39 4.3 16.3 1.0 CA A:GLU35 4.5 16.8 1.0 C A:GLU36 4.6 20.8 1.0 O A:GLU35 4.6 17.4 1.0 N A:GLU35 4.9 15.9 1.0

Calcium binding site 8 out of 8 in the Annexin A5 Protein Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Annexin A5 Protein Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca408 b:69.9 occ:1.00 O A:GLY188 2.4 25.8 1.0 O A:HOH792 2.6 33.0 1.0 C A:GLY188 3.1 27.3 1.0 CA A:GLY188 3.2 25.7 1.0 OE2 A:GLU191 4.0 19.9 1.0 O A:HOH536 4.3 29.7 1.0 N A:THR189 4.4 22.7 1.0 O A:HOH521 4.5 27.1 1.0 O A:HOH719 4.6 41.3 1.0 N A:GLY188 4.6 21.4 1.0 CD A:GLU191 4.9 21.6 1.0

Z.C.Hua, W.Tang. Structure Dissection of the Membrane Aggregation Mechanism Induced By Annexin A5 Mutation To Be Published.