Calcium in PDB 8i3y: Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa.

All present enzymatic activity of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa.:
2.8.3.5;

The structure of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa., PDB code: 8i3y was solved by K.Mochizuki, D.K.Inaoka, K.Fukuda, H.Kurasawa, K.Iyoda, U.Nakai, S.Harada, E.O.Balogun, M.Mazet, Y.Millerioux, F.Bringaud, M.Boshart, K.Hirayama, K.Kita, T.Shiba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.98 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.801, 163.654, 186.943, 90, 90, 90
R / Rfree (%)	19.2 / 24.8

The binding sites of Calcium atom in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa. (pdb code 8i3y). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa., PDB code: 8i3y:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca602 b:61.4 occ:1.00 O A:GLN211 2.5 32.5 1.0 OD1 A:ASP239 2.5 34.1 1.0 OD2 A:ASP239 2.6 37.1 1.0 CG A:ASP239 3.0 33.1 1.0 C A:GLN211 3.6 35.1 1.0 O A:GLY210 4.2 31.1 1.0 N A:THR212 4.3 30.9 1.0 CA A:THR212 4.4 29.4 1.0 CG1 A:VAL213 4.4 29.2 1.0 CB A:ASP239 4.5 31.9 1.0 CA A:GLN211 4.6 38.6 1.0 N A:VAL213 4.6 26.5 1.0 O A:TYR237 4.8 26.4 1.0 C A:THR212 5.0 27.7 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca502 b:70.4 occ:1.00 O B:GLN211 2.6 32.4 1.0 OD1 B:ASP239 2.8 43.0 1.0 OD2 B:ASP239 3.4 39.8 1.0 CG B:ASP239 3.5 37.1 1.0 C B:GLN211 3.7 34.0 1.0 O B:GLY210 4.5 32.9 1.0 CA B:GLN211 4.6 35.7 1.0 N B:THR212 4.6 30.2 1.0 CA B:THR212 4.7 32.8 1.0 CB B:ASP239 5.0 33.6 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa. within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca701 b:69.2 occ:1.00 OD1 C:ASP239 2.6 38.9 1.0 O C:GLN211 2.9 37.8 1.0 CG C:ASP239 3.4 37.8 1.0 OD2 C:ASP239 3.4 43.9 1.0 C C:GLN211 4.0 38.0 1.0 O C:GLY210 4.6 38.2 1.0 O C:TYR237 4.7 28.0 1.0 CB C:ASP239 4.8 33.5 1.0 N C:THR212 4.8 34.6 1.0 CA C:GLN211 4.9 38.8 1.0 CA C:THR212 4.9 35.8 1.0 CG1 C:VAL213 4.9 35.9 1.0 O C:VAL236 5.0 36.4 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa. within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca502 b:84.5 occ:1.00 O D:GLN211 2.8 38.1 1.0 OD1 D:ASP239 3.1 51.2 1.0 OD2 D:ASP239 3.3 43.8 1.0 CG D:ASP239 3.5 45.3 1.0 C D:GLN211 3.9 37.3 1.0 O C:HOH802 4.1 33.9 1.0 O D:GLY210 4.6 37.1 1.0 CA D:GLN211 4.7 39.0 1.0 N D:THR212 4.9 32.5 1.0 CA D:THR212 4.9 30.9 1.0 O D:HOH634 5.0 30.3 1.0

K.Mochizuki, D.K.Inaoka, K.Fukuda, H.Kurasawa, K.Iyoda, U.Nakai, S.Harada, E.O.Balogun, M.Mazet, Y.Millerioux, F.Bringaud, M.Boshart, K.Hirayama, K.Kita, T.Shiba. Crystal Structure of Asct From Trypanosoma Brucei in Complex with Succinyl-Coa. To Be Published.