Calcium in PDB 8iod: Cryo-Em Structure of the Pg-901-Bound Human Melanocortin Receptor 5 (MC5R)-Gs Complex

The binding sites of Calcium atom in the Cryo-Em Structure of the Pg-901-Bound Human Melanocortin Receptor 5 (MC5R)-Gs Complex (pdb code 8iod). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of the Pg-901-Bound Human Melanocortin Receptor 5 (MC5R)-Gs Complex, PDB code: 8iod:

Calcium binding site 1 out of 1 in the Cryo-Em Structure of the Pg-901-Bound Human Melanocortin Receptor 5 (MC5R)-Gs Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of the Pg-901-Bound Human Melanocortin Receptor 5 (MC5R)-Gs Complex within 5.0Å range: probe atom residue distance (Å) B Occ R:Ca501 b:30.0 occ:1.00 OE2 R:GLU92 2.4 36.6 1.0 O L:4J24 2.4 24.6 1.0 O L:ASP2 2.5 41.8 1.0 OD1 R:ASP119 2.7 29.1 1.0 OD1 R:ASP115 2.8 43.8 1.0 OD2 R:ASP119 2.9 29.1 1.0 CG R:ASP119 3.1 29.1 1.0 CD R:GLU92 3.5 36.6 1.0 C L:4J24 3.6 24.6 1.0 CG R:ASP115 3.6 43.8 1.0 C L:ASP2 3.7 41.8 1.0 OD2 R:ASP115 3.7 43.8 1.0 CD L:ARG5 3.8 29.1 1.0 CG L:ARG5 3.9 29.1 1.0 OE1 R:GLU92 4.0 36.6 1.0 N L:ASP2 4.2 41.8 1.0 N L:4J24 4.3 24.6 1.0 C L:PRO3 4.3 32.0 1.0 CA L:4J24 4.4 24.6 1.0 CA L:ASP2 4.5 41.8 1.0 N L:ARG5 4.6 29.1 1.0 O L:PRO3 4.6 32.0 1.0 CB R:ASP119 4.6 29.1 1.0 N L:PRO3 4.7 32.0 1.0 CA L:ARG5 4.7 29.1 1.0 CG R:GLU92 4.7 36.6 1.0 NH1 L:ARG5 4.8 29.1 1.0 O R:ASP115 4.8 43.8 1.0 CA L:PRO3 4.8 32.0 1.0 CB L:4J24 4.8 24.6 1.0 CB L:ARG5 4.9 29.1 1.0 CB L:ASP2 4.9 41.8 1.0

W.Feng, Q.Zhou, X.Chen, A.Dai, X.Cai, X.Liu, F.Zhao, Y.Chen, C.Ye, Y.Xu, Z.Cong, H.Li, S.Lin, D.Yang, M.W.Wang. Structural Insights Into Ligand Recognition and Subtype Selectivity of the Human Melanocortin-3 and Melanocortin-5 Receptors. Cell Discov V. 9 81 2023.
ISSN: ESSN 2056-5968
PubMed: 37524700
DOI: 10.1107/S0907444909042073