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Calcium in PDB 8itg: Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Variant MSLAW21G

Protein crystallography data

The structure of Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Variant MSLAW21G, PDB code: 8itg was solved by Y.Nakashima, M.Hiroyuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.98 / 2.25
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 127.232, 127.232, 170.611, 90, 90, 90
R / Rfree (%) 18.2 / 20.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Variant MSLAW21G (pdb code 8itg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Variant MSLAW21G, PDB code: 8itg:

Calcium binding site 1 out of 1 in 8itg

Go back to Calcium Binding Sites List in 8itg
Calcium binding site 1 out of 1 in the Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Variant MSLAW21G


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Variant MSLAW21G within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca602

b:48.4
occ:1.00
OE2 A:GLU44 2.2 49.0 1.0
OD1 A:ASN87 2.3 36.1 1.0
O A:HOH720 2.3 35.0 1.0
NE2 A:HIS261 2.3 39.3 1.0
NE2 A:HIS259 2.4 39.3 1.0
O B:GLY21 2.5 108.3 1.0
CE1 A:HIS261 3.0 42.5 1.0
CE1 A:HIS259 3.1 39.8 1.0
CG A:ASN87 3.2 34.3 1.0
CD A:GLU44 3.3 47.5 1.0
C B:GLY21 3.4 108.2 1.0
OXT B:GLY21 3.4 108.0 1.0
ND2 A:ASN87 3.5 34.8 1.0
CD2 A:HIS261 3.5 43.4 1.0
CD2 A:HIS259 3.5 37.8 1.0
OE1 A:GLU44 3.8 51.0 1.0
CD2 A:HIS88 4.2 36.2 1.0
ND1 A:HIS261 4.2 45.3 1.0
O A:GLY293 4.3 42.2 1.0
ND1 A:HIS259 4.3 39.6 1.0
CG A:GLU44 4.4 48.9 1.0
O B:PHE20 4.5 128.2 1.0
CG A:HIS261 4.5 44.6 1.0
OD2 A:ASP11 4.5 43.9 1.0
CG A:HIS259 4.6 36.2 1.0
CA A:GLY293 4.6 37.2 1.0
CB A:ASN87 4.6 32.5 1.0
CE1 A:HIS295 4.6 49.9 1.0
NE2 A:HIS295 4.7 50.4 1.0
N A:ASN87 4.7 35.9 1.0
NE2 A:HIS88 4.8 38.4 1.0
CA B:GLY21 4.8 133.5 1.0
C A:GLY293 4.9 40.2 1.0

Reference:

Y.Nakashima, M.Hiroyuki. Crystal Structure of Lasso Peptide Epimerase Mslh in Complexed with Precursor Peptide Variant MSLAW21G To Be Published.
Page generated: Fri Jul 19 09:52:59 2024

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