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Calcium in PDB 8iw5: Crystal Structure of Liprin-Beta H2H3 Dimer

Protein crystallography data

The structure of Crystal Structure of Liprin-Beta H2H3 Dimer, PDB code: 8iw5 was solved by J.Zhang, S.Chen, Z.Wei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.33 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 29.793, 50.637, 30.78, 90, 113.44, 90
R / Rfree (%) 22.1 / 27.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Liprin-Beta H2H3 Dimer (pdb code 8iw5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Liprin-Beta H2H3 Dimer, PDB code: 8iw5:

Calcium binding site 1 out of 1 in 8iw5

Go back to Calcium Binding Sites List in 8iw5
Calcium binding site 1 out of 1 in the Crystal Structure of Liprin-Beta H2H3 Dimer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Liprin-Beta H2H3 Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca101

b:26.8
occ:0.50
OE2 B:GLU84 2.3 48.2 1.0
OE2 B:GLU80 2.4 36.0 0.5
CD B:GLU80 3.3 36.0 0.5
CD B:GLU84 3.4 50.2 1.0
OE1 B:GLU84 3.8 52.4 1.0
CG B:GLU80 3.9 28.9 0.5
OE1 B:GLU80 4.3 35.3 0.5
CG B:GLU84 4.6 37.2 1.0

Reference:

K.Guo, J.Zhang, P.Huang, Y.Xu, W.Pan, K.Li, L.Chen, L.Luo, W.Yu, S.Chen, S.He, Z.Wei, C.Yu. KANK1 Shapes Focal Adhesions By Orchestrating Protein Binding, Mechanical Force Sensing, and Phase Separation. Cell Rep V. 42 13321 2023.
ISSN: ESSN 2211-1247
PubMed: 37874676
DOI: 10.1016/J.CELREP.2023.113321
Page generated: Fri Jul 19 09:53:35 2024

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