Calcium in PDB 8j5k: Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana

The structure of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana also contains other interesting chemical elements:

Magnesium	(Mg)	206 atoms
Manganese	(Mn)	8 atoms
Iron	(Fe)	6 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Calcium atom in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana (pdb code 8j5k). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana, PDB code: 8j5k:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:97.5 occ:1.00 CA1 A:OEX401 0.0 97.5 1.0 O1 A:OEX401 2.4 97.5 1.0 O2 A:OEX401 2.5 97.5 1.0 O5 A:OEX401 2.8 97.5 1.0 OD1 A:ASP170 3.2 77.4 1.0 MN2 A:OEX401 3.3 97.5 1.0 MN3 A:OEX401 3.4 97.5 1.0 OD2 A:ASP170 3.4 77.4 1.0 MN1 A:OEX401 3.5 97.5 1.0 CG A:ASP170 3.6 77.4 1.0 NE2 A:GLN165 3.6 70.7 1.0 MN4 A:OEX401 3.8 97.5 1.0 O3 A:OEX401 3.9 97.5 1.0 O4 A:OEX401 4.0 97.5 1.0 NH1 C:ARG357 4.5 79.1 1.0 OH A:TYR161 4.5 66.8 1.0 CD A:GLN165 4.6 70.7 1.0 CG A:GLN165 4.7 70.7 1.0 NH2 C:ARG357 4.8 79.1 1.0 CB A:ASP170 4.8 77.4 1.0

Calcium binding site 2 out of 2 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ a:Ca401 b:97.5 occ:1.00 CA1 a:OEX401 0.0 97.5 1.0 O1 a:OEX401 2.4 97.5 1.0 O2 a:OEX401 2.5 97.5 1.0 O5 a:OEX401 2.8 97.5 1.0 OD1 a:ASP170 3.2 77.4 1.0 MN2 a:OEX401 3.3 97.5 1.0 MN3 a:OEX401 3.4 97.5 1.0 OD2 a:ASP170 3.4 77.4 1.0 MN1 a:OEX401 3.5 97.5 1.0 CG a:ASP170 3.6 77.4 1.0 NE2 a:GLN165 3.6 70.7 1.0 MN4 a:OEX401 3.8 97.5 1.0 O3 a:OEX401 3.9 97.5 1.0 O4 a:OEX401 4.0 97.5 1.0 NH1 c:ARG357 4.5 79.1 1.0 OH a:TYR161 4.5 66.8 1.0 CD a:GLN165 4.6 70.7 1.0 CG a:GLN165 4.7 70.7 1.0 NH2 c:ARG357 4.8 79.1 1.0 CB a:ASP170 4.8 77.4 1.0

S.Zhao, L.Shen, X.Li, Q.Tao, Z.Li, C.Xu, C.Zhou, Y.Yang, M.Sang, G.Han, L.J.Yu, T.Kuang, J.R.Shen, W.Wang. Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana. Nat Commun V. 14 8164 2023.
ISSN: ESSN 2041-1723
PubMed: 38071196
DOI: 10.1038/S41467-023-44055-8