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Calcium in PDB 8jmo: Structure of A Leaf-Branch Compost Cutinase, Iccg in Complex with 4- ((4-Hydroxybutoxy)Carbonyl)Benzoic Acid

Enzymatic activity of Structure of A Leaf-Branch Compost Cutinase, Iccg in Complex with 4- ((4-Hydroxybutoxy)Carbonyl)Benzoic Acid

All present enzymatic activity of Structure of A Leaf-Branch Compost Cutinase, Iccg in Complex with 4- ((4-Hydroxybutoxy)Carbonyl)Benzoic Acid:
3.1.1.101; 3.1.1.74;

Protein crystallography data

The structure of Structure of A Leaf-Branch Compost Cutinase, Iccg in Complex with 4- ((4-Hydroxybutoxy)Carbonyl)Benzoic Acid, PDB code: 8jmo was solved by Y.Yang, T.Xue, Y.Zheng, S.Cheng, R.-T.Guo, C.-C.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.94 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.624, 85.423, 148.064, 90, 90, 90
R / Rfree (%) 20.5 / 25.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of A Leaf-Branch Compost Cutinase, Iccg in Complex with 4- ((4-Hydroxybutoxy)Carbonyl)Benzoic Acid (pdb code 8jmo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of A Leaf-Branch Compost Cutinase, Iccg in Complex with 4- ((4-Hydroxybutoxy)Carbonyl)Benzoic Acid, PDB code: 8jmo:

Calcium binding site 1 out of 1 in 8jmo

Go back to Calcium Binding Sites List in 8jmo
Calcium binding site 1 out of 1 in the Structure of A Leaf-Branch Compost Cutinase, Iccg in Complex with 4- ((4-Hydroxybutoxy)Carbonyl)Benzoic Acid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A Leaf-Branch Compost Cutinase, Iccg in Complex with 4- ((4-Hydroxybutoxy)Carbonyl)Benzoic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:9.2
occ:1.00
 O A:THR195 2.4 7.5 1.0
O A:HOH688 2.4 10.5 1.0
OD1 A:ASP193 2.5 11.3 1.0
O A:HOH585 2.5 9.7 1.0
OD2 A:ASP193 2.5 9.8 1.0
OG1 A:THR195 2.6 7.7 1.0
CG A:ASP193 2.9 14.2 1.0
C A:THR195 3.4 10.8 1.0
CB A:THR195 3.6 7.2 1.0
CA A:THR195 3.9 8.8 1.0
N A:THR195 4.1 7.5 1.0
O A:HOH526 4.3 14.2 1.0
CB A:ASP193 4.4 7.9 1.0
O A:HOH733 4.6 19.8 1.0
N A:PHE196 4.6 9.5 1.0
O A:HOH760 4.6 29.9 1.0
NH1 A:ARG173 4.6 8.2 1.0
OE2 A:GLU176 4.8 16.4 1.0
NH2 A:ARG173 4.8 10.5 1.0
CG2 A:THR195 4.9 10.3 1.0
CA A:PHE196 5.0 10.5 1.0

Reference:

Y.Yang, S.Cheng, Y.Zheng, T.Xue, J.W.Huang, L.Zhang, Y.Yang, R.T.Guo, C.C.Chen. Remodeling the Polymer-Binding Cavity to Improve the Efficacy of Pbat-Degrading Enzyme. J Hazard Mater V. 464 32965 2023.
ISSN: ESSN 1873-3336
PubMed: 37979420
DOI: 10.1016/J.JHAZMAT.2023.132965
Page generated: Thu Dec 28 01:42:52 2023

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