Calcium in PDB 8ojb: Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site

All present enzymatic activity of Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site:
2.7.7.7; 3.1.26.4;

The binding sites of Calcium atom in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site (pdb code 8ojb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site, PDB code: 8ojb:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1301 b:39.0 occ:1.00 O A:HOH1420 2.2 46.0 1.0 OD1 A:ASP368 2.5 27.1 1.0 O A:TYR465 2.6 17.6 1.0 OD1 A:ASP471 2.6 14.7 1.0 OD2 A:ASP471 2.6 13.3 1.0 O A:HOH1450 2.7 14.9 1.0 O A:HOH1496 2.7 35.3 1.0 O A:HOH1418 2.8 25.5 1.0 CG A:ASP471 3.0 12.3 1.0 CG A:ASP368 3.7 23.8 1.0 C A:TYR465 3.7 14.7 1.0 CA A:CA1302 4.2 70.7 1.0 O3' C:DA23 4.2 88.7 1.0 CB A:ASP368 4.2 17.2 1.0 N A:TYR465 4.3 12.7 1.0 CA A:ASP368 4.3 13.7 1.0 CG2 A:ILE467 4.4 12.7 1.0 CB A:ASP471 4.5 11.8 1.0 CA A:TYR465 4.5 14.1 1.0 C A:ASN466 4.6 16.1 1.0 N A:ILE467 4.7 13.9 1.0 CB A:TYR465 4.7 15.0 1.0 N A:ILE369 4.7 10.9 1.0 N A:ASN466 4.8 15.9 1.0 O A:ASN466 4.8 17.0 1.0 OD2 A:ASP368 4.8 28.8 1.0 C4' C:DA23 4.8 82.3 1.0 O A:PHE367 4.8 11.3 1.0 CB A:ASN466 5.0 24.6 1.0 CA A:ASN466 5.0 18.3 1.0 CA A:ILE467 5.0 13.7 1.0 C5' C:DA23 5.0 87.0 1.0

Calcium binding site 2 out of 2 in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1302 b:70.7 occ:1.00 OE2 A:GLU370 2.1 30.6 1.0 O A:HOH1418 2.5 25.5 1.0 OD1 A:ASP368 2.5 27.1 1.0 OD2 A:ASP368 2.6 28.8 1.0 S2P C:AS33 2.7 114.8 1.0 O A:ILE369 2.7 12.2 1.0 O5' C:AS33 2.9 89.6 1.0 CG A:ASP368 2.9 23.8 1.0 O A:HOH1402 3.0 46.5 1.0 CD A:GLU370 3.2 29.0 1.0 P C:AS33 3.2 96.7 1.0 OD1 A:ASP581 3.4 55.1 1.0 O3' C:DA23 3.6 88.7 1.0 C5' C:AS33 3.6 82.7 1.0 O A:HOH1496 3.7 35.3 1.0 OE1 A:GLU370 3.7 29.7 1.0 C A:ILE369 3.9 11.0 1.0 CA A:CA1301 4.2 39.0 1.0 CG A:GLU370 4.4 23.7 1.0 N A:ILE369 4.4 10.9 1.0 CB A:ASP368 4.4 17.2 1.0 CG A:ASP581 4.6 48.4 1.0 OP1 C:AS33 4.7 98.6 1.0 N A:GLU370 4.7 12.8 1.0 C4' C:AS33 4.7 80.8 1.0 OD2 A:ASP471 4.7 13.3 1.0 CA A:GLU370 4.8 14.4 1.0 CA A:ILE369 4.8 10.7 1.0 O A:HOH1420 4.8 46.0 1.0 C A:ASP368 4.8 12.3 1.0 O3' C:AS33 4.9 78.4 1.0 C3' C:AS33 4.9 81.5 1.0 C3' C:DA23 5.0 83.6 1.0

E.Gustavsson, K.Grunewald, P.Elias, B.M.Hallberg. Dynamics of the Herpes Simplex Virus Dna Polymerase Holoenzyme During Dna Synthesis and Proof-Reading Revealed By Cryo-Em To Be Published.