Calcium in PDB 8ojd: Hsv-1 Dna Polymerase Beta-Hairpin Loop

All present enzymatic activity of Hsv-1 Dna Polymerase Beta-Hairpin Loop:
2.7.7.7; 3.1.26.4;

The binding sites of Calcium atom in the Hsv-1 Dna Polymerase Beta-Hairpin Loop (pdb code 8ojd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Hsv-1 Dna Polymerase Beta-Hairpin Loop, PDB code: 8ojd:

Calcium binding site 1 out of 1 in the Hsv-1 Dna Polymerase Beta-Hairpin Loop


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Hsv-1 Dna Polymerase Beta-Hairpin Loop within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1301 b:62.9 occ:1.00 O A:TYR465 2.4 42.4 1.0 OD1 A:ASP368 2.5 68.5 1.0 OD1 A:ASP471 2.5 48.7 1.0 OD2 A:ASP471 2.8 47.0 1.0 CG A:ASP471 3.0 40.1 1.0 CG A:ASP368 3.5 68.8 1.0 C A:TYR465 3.7 35.3 1.0 OD2 A:ASP368 4.2 77.7 1.0 O3' C:DA23 4.2 159.9 1.0 C A:ASN466 4.3 32.5 1.0 N A:TYR465 4.4 31.4 1.0 CB A:ASP471 4.4 37.6 1.0 N A:ILE467 4.5 31.9 1.0 CA A:TYR465 4.5 34.5 1.0 C4' C:DA23 4.5 137.0 1.0 CA A:ASP368 4.5 40.4 1.0 CB A:ASP368 4.5 51.7 1.0 O A:ASN466 4.6 31.6 1.0 CG2 A:ILE467 4.6 32.2 1.0 N A:ASN466 4.6 35.1 1.0 C5' C:DA23 4.7 138.0 1.0 CB A:ASN466 4.7 43.7 1.0 CA A:ASN466 4.7 37.1 1.0 CB A:TYR465 4.8 39.3 1.0 N A:ILE369 4.8 36.8 1.0 CA A:ILE467 4.9 33.1 1.0 O A:PHE367 4.9 40.9 1.0 C3' C:DA23 5.0 141.7 1.0

E.Gustavsson, K.Grunewald, P.Elias, B.M.Hallberg. Dynamics of the Herpes Simplex Virus Dna Polymerase Holoenzyme During Dna Synthesis and Proof-Reading Revealed By Cryo-Em To Be Published.