Calcium in PDB 8p3a: Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form

The structure of Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form also contains other interesting chemical elements:

Zinc

(Zn)

20 atoms

The binding sites of Calcium atom in the Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form (pdb code 8p3a). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form, PDB code: 8p3a:

Calcium binding site 1 out of 1 in the Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:0.0 occ:1.00 HA2 A:GLY111 2.7 0.0 1.0 HD21 A:ASN115 2.7 0.0 1.0 H A:SER117 2.8 0.0 1.0 HB2 A:ALA116 3.0 0.0 1.0 OD1 A:ASN115 3.0 0.0 1.0 OG A:SER117 3.1 0.0 1.0 H A:ALA112 3.1 0.0 1.0 OD1 A:ASP113 3.1 0.0 1.0 HB1 A:ALA116 3.2 0.0 1.0 H A:ASP113 3.2 0.0 1.0 H A:ALA116 3.3 0.0 1.0 ND2 A:ASN115 3.4 0.0 1.0 HA3 A:GLY111 3.5 0.0 1.0 CB A:ALA116 3.5 0.0 1.0 N A:SER117 3.5 0.0 1.0 CA A:GLY111 3.5 0.0 1.0 CG A:ASN115 3.6 0.0 1.0 N A:ALA112 3.8 0.0 1.0 CG A:ASP113 3.8 0.0 1.0 O A:ASP113 4.0 0.0 1.0 N A:ALA116 4.0 0.0 1.0 CA A:ALA116 4.1 0.0 1.0 C A:GLY111 4.1 0.0 1.0 N A:ASP113 4.2 0.0 1.0 OD2 A:ASP113 4.2 0.0 1.0 CB A:SER117 4.2 0.0 1.0 C A:ALA116 4.2 0.0 1.0 HD22 A:ASN115 4.3 0.0 1.0 CA A:SER117 4.3 0.0 1.0 O A:PHE110 4.4 0.0 1.0 HB3 A:ALA116 4.5 0.0 1.0 HA A:SER117 4.5 0.0 1.0 HB3 A:SER117 4.6 0.0 1.0 N A:GLY111 4.7 0.0 1.0 C A:ASP113 4.8 0.0 1.0 CA A:ASP113 4.9 0.0 1.0 CB A:ASP113 4.9 0.0 1.0 CA A:ALA112 4.9 0.0 1.0

D.A.Prokhorov, G.V.Mikoulinskaia, N.V.Molochkov, V.N.Uversky, V.P.Kutyshenko. Mechanism of CA2+-Dependent Activation of L-Alanoyl-D-Glutamate Peptidase Bacteriophage T5. To Be Published.