Calcium in PDB 8qyd: Zorya Anti-Bacteriophage Defense System Zorab

The binding sites of Calcium atom in the Zorya Anti-Bacteriophage Defense System Zorab (pdb code 8qyd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Zorya Anti-Bacteriophage Defense System Zorab, PDB code: 8qyd:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the Zorya Anti-Bacteriophage Defense System Zorab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Zorya Anti-Bacteriophage Defense System Zorab within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca802 b:34.8 occ:1.00 O B:TYR220 2.2 40.4 1.0 O B:HOH923 2.2 30.2 1.0 OE1 A:GLU89 2.2 47.9 1.0 O B:ASP217 2.3 41.2 1.0 OE1 A:GLU86 2.7 44.6 1.0 OE2 A:GLU89 2.7 53.7 1.0 CD A:GLU89 2.8 50.2 1.0 OE2 A:GLU86 3.1 42.2 1.0 CD A:GLU86 3.2 43.3 1.0 C B:TYR220 3.4 36.6 1.0 C B:ASP217 3.5 32.5 1.0 O A:HOH904 4.0 40.7 1.0 CA B:ASP221 4.2 37.3 1.0 N B:ASP221 4.2 39.2 1.0 CG A:GLU89 4.3 41.0 1.0 CA B:SER218 4.3 35.7 1.0 N B:SER218 4.3 39.1 1.0 CA B:ASP217 4.4 29.4 1.0 O B:HOH908 4.4 35.6 1.0 N B:TYR220 4.4 43.0 1.0 CA B:TYR220 4.5 34.0 1.0 C B:SER218 4.6 36.2 1.0 CB B:ASP217 4.6 38.3 1.0 O A:HOH937 4.7 29.1 1.0 OD1 B:ASP221 4.7 50.1 1.0 CG A:GLU86 4.7 38.8 1.0 OG B:SER222 4.8 51.8 1.0 O B:SER218 4.8 44.1 1.0 C B:ASP221 4.9 42.0 1.0 N B:SER222 4.9 44.3 1.0 CB A:GLU89 4.9 36.2 1.0

Calcium binding site 2 out of 5 in the Zorya Anti-Bacteriophage Defense System Zorab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Zorya Anti-Bacteriophage Defense System Zorab within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca804 b:27.8 occ:1.00 O C:ASP217 2.2 49.8 1.0 O B:HOH939 2.2 34.8 1.0 OE1 B:GLU89 2.3 54.1 1.0 O C:TYR220 2.3 44.8 1.0 OE1 B:GLU86 2.7 53.7 1.0 OE2 B:GLU86 2.8 46.3 1.0 CD B:GLU89 3.0 57.2 1.0 OE2 B:GLU89 3.0 59.4 1.0 CD B:GLU86 3.1 48.7 1.0 C C:ASP217 3.4 34.7 1.0 C C:TYR220 3.6 38.5 1.0 O B:HOH915 3.9 45.3 1.0 CA C:ASP217 4.2 30.0 1.0 CA C:ASP221 4.2 42.6 1.0 N C:ASP221 4.3 48.5 1.0 N C:SER218 4.4 34.2 1.0 CG B:GLU89 4.4 46.9 1.0 CB C:ASP217 4.5 40.5 1.0 CA C:SER218 4.5 30.4 1.0 N C:TYR220 4.5 37.9 1.0 CG B:GLU86 4.6 41.4 1.0 CA C:TYR220 4.6 35.0 1.0 OG C:SER222 4.7 48.3 1.0 C C:SER218 4.8 36.3 1.0 C C:ASP221 4.8 43.4 1.0 N C:SER222 4.9 45.5 1.0 O C:HOH909 4.9 33.5 1.0 CB B:GLU89 4.9 44.2 1.0

Calcium binding site 3 out of 5 in the Zorya Anti-Bacteriophage Defense System Zorab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Zorya Anti-Bacteriophage Defense System Zorab within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca803 b:44.5 occ:1.00 O D:HOH906 2.2 37.9 1.0 OE2 C:GLU89 2.2 53.9 1.0 O D:ASP217 2.3 43.5 1.0 O D:TYR220 2.3 40.1 1.0 O D:HOH910 2.7 38.1 1.0 CD C:GLU89 3.0 50.4 1.0 OE1 C:GLU89 3.0 53.2 1.0 OE1 C:GLU86 3.1 35.0 1.0 C D:TYR220 3.3 34.3 1.0 OE2 C:GLU86 3.4 44.4 1.0 C D:ASP217 3.4 29.1 1.0 CD C:GLU86 3.6 40.2 1.0 N D:TYR220 4.0 37.5 1.0 CA D:SER218 4.0 24.8 1.0 C D:SER218 4.1 28.6 1.0 OD1 D:ASP221 4.1 53.9 1.0 N D:ASP221 4.1 38.0 1.0 CA D:ASP221 4.2 38.6 1.0 N D:SER218 4.2 29.0 1.0 O D:SER218 4.3 41.9 1.0 CA D:TYR220 4.3 32.6 1.0 CG C:GLU89 4.4 40.0 1.0 CA D:ASP217 4.5 21.2 1.0 N D:LEU219 4.6 25.4 1.0 CB D:ASP217 4.8 32.6 1.0 C D:LEU219 4.8 34.4 1.0 O C:HOH941 4.9 37.4 1.0

Calcium binding site 4 out of 5 in the Zorya Anti-Bacteriophage Defense System Zorab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Zorya Anti-Bacteriophage Defense System Zorab within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca804 b:44.6 occ:1.00 O D:HOH914 2.2 23.4 1.0 OE1 D:GLU89 2.3 45.5 1.0 O E:TYR220 2.3 36.6 1.0 OE2 D:GLU89 2.4 54.6 1.0 O E:ASP217 2.4 39.7 1.0 CD D:GLU89 2.6 47.8 1.0 O D:HOH901 2.8 42.0 1.0 OE1 D:GLU86 3.1 42.0 1.0 OE2 D:GLU86 3.2 43.0 1.0 C E:ASP217 3.4 30.1 1.0 C E:TYR220 3.4 34.8 1.0 CD D:GLU86 3.5 43.4 1.0 O D:HOH905 4.0 48.4 1.0 CA E:ASP221 4.1 40.1 1.0 OD1 E:ASP221 4.1 45.6 1.0 CA E:SER218 4.1 30.7 1.0 N E:ASP221 4.1 40.8 1.0 CG D:GLU89 4.1 33.0 1.0 N E:SER218 4.2 29.3 1.0 N E:TYR220 4.3 33.0 1.0 C E:SER218 4.3 36.3 1.0 CA E:ASP217 4.4 27.1 1.0 CA E:TYR220 4.5 31.1 1.0 CB E:ASP217 4.5 30.3 1.0 O E:SER218 4.6 43.9 1.0 N E:SER222 4.7 27.9 1.0 C E:ASP221 4.8 36.6 1.0 N E:LEU219 4.9 34.0 1.0 CB D:GLU89 4.9 33.1 1.0

Calcium binding site 5 out of 5 in the Zorya Anti-Bacteriophage Defense System Zorab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Zorya Anti-Bacteriophage Defense System Zorab within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca803 b:46.8 occ:1.00 O A:HOH906 2.2 25.1 1.0 OE1 E:GLU89 2.2 50.3 1.0 OE2 E:GLU89 2.3 46.5 1.0 O A:ASP217 2.4 41.1 1.0 OE2 E:GLU86 2.5 51.5 1.0 CD E:GLU89 2.6 48.9 1.0 OE1 E:GLU86 2.7 45.0 1.0 O A:TYR220 2.8 32.8 1.0 CD E:GLU86 2.9 43.5 1.0 O A:HOH912 3.4 33.0 1.0 C A:ASP217 3.5 33.8 1.0 C A:TYR220 3.9 30.4 1.0 CA A:SER218 4.0 32.3 1.0 CG E:GLU89 4.1 36.5 1.0 O E:HOH927 4.1 34.0 1.0 N A:SER218 4.2 31.3 1.0 CG E:GLU86 4.3 34.3 1.0 CA A:ASP221 4.4 42.6 1.0 C A:SER218 4.5 35.6 1.0 CA A:ASP217 4.5 31.6 1.0 N A:ASP221 4.6 39.2 1.0 CB A:ASP217 4.6 34.8 1.0 OD2 A:ASP221 4.7 54.3 1.0 N A:TYR220 4.7 39.6 1.0 O A:SER218 4.7 43.0 1.0 CB E:GLU89 4.8 37.1 1.0 CA E:GLU86 4.8 27.9 1.0 CB E:GLU86 4.9 34.7 1.0 CA A:TYR220 4.9 31.1 1.0

H.Hu, N.M.I.Taylor. Zorya Anti-Bacteriophage Defense System Zorab To Be Published.