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Calcium in PDB 8r2n: Structure of the Beer Filament

Calcium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Calcium atom in the Structure of the Beer Filament (pdb code 8r2n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the Structure of the Beer Filament, PDB code: 8r2n:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 12 in 8r2n

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Calcium binding site 1 out of 12 in the Structure of the Beer Filament


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Beer Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:28.3
occ:1.00
O A:HOH512 1.3 30.0 1.0
O3B A:ATP400 2.4 28.8 1.0
PB A:ATP400 3.3 28.8 1.0
PG A:ATP400 3.4 28.8 1.0
O3A A:ATP400 3.4 28.8 1.0
O2B A:ATP400 3.5 28.8 1.0
O2G A:ATP400 3.5 28.8 1.0
OD1 A:ASP201 3.5 28.6 1.0
O1G A:ATP400 3.5 28.8 1.0
OD2 A:ASP201 3.8 28.6 1.0
OD1 A:ASP42 3.9 26.9 1.0
CD A:GLU171 4.0 26.8 1.0
OE2 A:GLU171 4.0 26.8 1.0
CG A:ASP201 4.1 28.6 1.0
OE1 A:GLU171 4.1 26.8 1.0
CG2 A:VAL365 4.2 23.0 1.0
O A:HOH513 4.3 62.0 1.0
O A:HOH504 4.3 30.0 1.0
CG A:GLU171 4.5 26.8 1.0
OD2 A:ASP42 4.5 26.9 1.0
CA A:GLY203 4.6 26.7 1.0
CG A:ASP42 4.6 26.9 1.0
NZ A:LYS47 4.7 26.7 1.0
O3G A:ATP400 4.7 28.8 1.0
O1B A:ATP400 4.7 28.8 1.0
O A:HOH501 4.7 30.0 1.0
CB A:GLU171 4.9 26.8 1.0
PA A:ATP400 4.9 28.8 1.0

Calcium binding site 2 out of 12 in 8r2n

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Calcium binding site 2 out of 12 in the Structure of the Beer Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Beer Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca401

b:27.1
occ:1.00
O B:HOH513 1.0 30.0 1.0
O3B B:ATP400 2.5 26.5 1.0
O3A B:ATP400 3.3 26.5 1.0
PB B:ATP400 3.3 26.5 1.0
O2B B:ATP400 3.4 26.5 1.0
O2G B:ATP400 3.6 26.5 1.0
OD1 B:ASP42 3.6 26.1 1.0
PG B:ATP400 3.7 26.5 1.0
OD1 B:ASP201 3.9 25.6 1.0
CD B:GLU171 4.0 26.1 1.0
OD2 B:ASP201 4.0 25.6 1.0
OE1 B:GLU171 4.1 26.1 1.0
OE2 B:GLU171 4.1 26.1 1.0
OD2 B:ASP42 4.1 26.1 1.0
O1G B:ATP400 4.2 26.5 1.0
CG2 B:VAL365 4.2 23.6 1.0
CG B:ASP42 4.3 26.1 1.0
NZ B:LYS47 4.3 25.9 1.0
O B:HOH516 4.4 62.0 1.0
CG B:ASP201 4.4 25.6 1.0
CG B:GLU171 4.5 26.1 1.0
O B:HOH504 4.6 30.0 1.0
O B:HOH501 4.6 30.0 1.0
O1B B:ATP400 4.7 26.5 1.0
O3G B:ATP400 4.8 26.5 1.0
PA B:ATP400 4.8 26.5 1.0
CA B:GLY203 4.8 23.8 1.0
CB B:VAL365 4.9 23.6 1.0
CB B:GLU171 4.9 26.1 1.0

Calcium binding site 3 out of 12 in 8r2n

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Calcium binding site 3 out of 12 in the Structure of the Beer Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the Beer Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca401

b:25.6
occ:1.00
O C:HOH508 0.9 30.0 1.0
O1G C:ATP400 2.2 21.6 1.0
O2B C:ATP400 2.3 21.6 1.0
OD1 C:ASP42 3.5 24.2 1.0
PB C:ATP400 3.6 21.6 1.0
PG C:ATP400 3.6 21.6 1.0
CG2 C:VAL365 3.9 23.7 1.0
O3B C:ATP400 3.9 21.6 1.0
OD2 C:ASP42 3.9 24.2 1.0
OD1 C:ASP201 4.0 25.1 1.0
CD C:GLU171 4.0 25.6 1.0
OD2 C:ASP201 4.0 25.1 1.0
OE1 C:GLU171 4.0 25.6 1.0
CG C:ASP42 4.1 24.2 1.0
OE2 C:GLU171 4.1 25.6 1.0
O C:HOH514 4.2 62.0 1.0
O3A C:ATP400 4.2 21.6 1.0
NZ C:LYS47 4.3 23.9 1.0
O3G C:ATP400 4.4 21.6 1.0
CG C:ASP201 4.4 25.1 1.0
CG C:GLU171 4.5 25.6 1.0
CB C:VAL365 4.7 23.7 1.0
O2G C:ATP400 4.7 21.6 1.0
O C:HOH501 4.8 30.0 1.0
O C:HOH505 4.8 30.0 1.0
O1B C:ATP400 4.9 21.6 1.0
CB C:GLU171 5.0 25.6 1.0
O2A C:ATP400 5.0 21.6 1.0

Calcium binding site 4 out of 12 in 8r2n

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Calcium binding site 4 out of 12 in the Structure of the Beer Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of the Beer Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca401

b:34.0
occ:1.00
O D:HOH507 0.8 30.0 1.0
OE1 D:GLU171 2.4 25.0 1.0
O3B D:ATP400 2.6 25.2 1.0
OD1 D:ASP42 3.4 25.1 1.0
PB D:ATP400 3.4 25.2 1.0
O2G D:ATP400 3.5 25.2 1.0
O2B D:ATP400 3.5 25.2 1.0
O3A D:ATP400 3.5 25.2 1.0
CD D:GLU171 3.6 25.0 1.0
PG D:ATP400 3.6 25.2 1.0
OD2 D:ASP42 4.0 25.1 1.0
OD1 D:ASP201 4.0 24.9 1.0
CG D:ASP42 4.1 25.1 1.0
OE2 D:GLU171 4.1 25.0 1.0
CG2 D:VAL365 4.1 21.7 1.0
O1G D:ATP400 4.2 25.2 1.0
NZ D:LYS47 4.3 24.1 1.0
OD2 D:ASP201 4.4 24.9 1.0
O D:HOH515 4.4 62.0 1.0
O D:HOH501 4.5 30.0 1.0
CG D:ASP201 4.6 24.9 1.0
O D:HOH504 4.7 30.0 1.0
CG D:GLU171 4.7 25.0 1.0
O1B D:ATP400 4.8 25.2 1.0
CB D:GLU171 4.8 25.0 1.0
O3G D:ATP400 4.8 25.2 1.0
CB D:VAL365 4.8 21.7 1.0
CA D:GLY44 4.9 23.7 1.0
CA D:GLY203 5.0 23.4 1.0

Calcium binding site 5 out of 12 in 8r2n

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Calcium binding site 5 out of 12 in the Structure of the Beer Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of the Beer Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca401

b:31.7
occ:1.00
O E:HOH509 1.2 30.0 1.0
O3B E:ATP400 2.5 28.2 1.0
O1G E:ATP400 2.8 28.2 1.0
PG E:ATP400 3.2 28.2 1.0
O2B E:ATP400 3.4 28.2 1.0
PB E:ATP400 3.4 28.2 1.0
O3A E:ATP400 3.6 28.2 1.0
OD1 E:ASP201 3.6 27.2 1.0
OD2 E:ASP201 3.8 27.2 1.0
O2G E:ATP400 3.8 28.2 1.0
OD1 E:ASP42 3.8 24.2 1.0
CD E:GLU171 3.9 24.4 1.0
OE2 E:GLU171 4.0 24.4 1.0
CG2 E:VAL365 4.0 22.4 1.0
OE1 E:GLU171 4.1 24.4 1.0
CG E:ASP201 4.1 27.2 1.0
O E:HOH513 4.3 62.0 1.0
OD2 E:ASP42 4.3 24.2 1.0
CG E:GLU171 4.4 24.4 1.0
O E:HOH504 4.4 30.0 1.0
CG E:ASP42 4.5 24.2 1.0
O3G E:ATP400 4.5 28.2 1.0
NZ E:LYS47 4.7 25.0 1.0
O E:HOH501 4.7 30.0 1.0
CA E:GLY203 4.7 25.8 1.0
CB E:GLU171 4.8 24.4 1.0
O1B E:ATP400 4.8 28.2 1.0
CB E:VAL365 4.9 22.4 1.0

Calcium binding site 6 out of 12 in 8r2n

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Calcium binding site 6 out of 12 in the Structure of the Beer Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of the Beer Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca401

b:33.2
occ:1.00
O F:HOH507 1.0 30.0 1.0
O1G F:ATP400 2.6 28.8 1.0
O3B F:ATP400 2.7 28.8 1.0
O2B F:ATP400 2.8 28.8 1.0
PB F:ATP400 3.1 28.8 1.0
O3A F:ATP400 3.3 28.8 1.0
PG F:ATP400 3.3 28.8 1.0
OD1 F:ASP42 3.6 25.9 1.0
OD2 F:ASP42 4.0 25.9 1.0
OD1 F:ASP201 4.0 26.9 1.0
OD2 F:ASP201 4.0 26.9 1.0
O2G F:ATP400 4.1 28.8 1.0
CG2 F:VAL365 4.1 23.3 1.0
O F:HOH514 4.1 62.0 1.0
CG F:ASP42 4.2 25.9 1.0
NZ F:LYS47 4.2 26.6 1.0
CD F:GLU171 4.3 25.1 1.0
OE2 F:GLU171 4.4 25.1 1.0
OE1 F:GLU171 4.4 25.1 1.0
O3G F:ATP400 4.4 28.8 1.0
CG F:ASP201 4.5 26.9 1.0
O1B F:ATP400 4.6 28.8 1.0
CG F:GLU171 4.7 25.1 1.0
PA F:ATP400 4.8 28.8 1.0
CB F:VAL365 4.9 23.3 1.0
CA F:GLY203 4.9 26.6 1.0
O F:HOH504 4.9 30.0 1.0
O F:HOH501 4.9 30.0 1.0

Calcium binding site 7 out of 12 in 8r2n

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Calcium binding site 7 out of 12 in the Structure of the Beer Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of the Beer Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca401

b:32.0
occ:1.00
O G:HOH510 1.2 30.0 1.0
O3B G:ATP400 2.5 28.8 1.0
OE2 G:GLU171 2.9 26.1 1.0
O3A G:ATP400 3.2 28.8 1.0
PB G:ATP400 3.3 28.8 1.0
O2B G:ATP400 3.5 28.8 1.0
O2G G:ATP400 3.6 28.8 1.0
OD1 G:ASP201 3.6 27.4 1.0
PG G:ATP400 3.7 28.8 1.0
OD2 G:ASP201 3.8 27.4 1.0
OD1 G:ASP42 3.8 24.9 1.0
CD G:GLU171 3.9 26.1 1.0
CG G:ASP201 4.1 27.4 1.0
CG2 G:VAL365 4.2 24.2 1.0
O G:HOH515 4.3 62.0 1.0
O1G G:ATP400 4.3 28.8 1.0
OD2 G:ASP42 4.4 24.9 1.0
OE1 G:GLU171 4.4 26.1 1.0
NZ G:LYS47 4.5 24.8 1.0
O G:HOH504 4.5 30.0 1.0
CG G:ASP42 4.5 24.9 1.0
CA G:GLY203 4.6 25.1 1.0
O1B G:ATP400 4.7 28.8 1.0
PA G:ATP400 4.7 28.8 1.0
O G:HOH501 4.8 30.0 1.0
CB G:GLU171 4.8 26.1 1.0
O3G G:ATP400 4.8 28.8 1.0
CB G:VAL365 5.0 24.2 1.0
CG G:GLU171 5.0 26.1 1.0

Calcium binding site 8 out of 12 in 8r2n

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Calcium binding site 8 out of 12 in the Structure of the Beer Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of the Beer Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca401

b:23.9
occ:1.00
O H:HOH515 1.0 30.0 1.0
O3B H:ATP400 2.6 25.9 1.0
O3A H:ATP400 3.4 25.9 1.0
PB H:ATP400 3.4 25.9 1.0
O2B H:ATP400 3.5 25.9 1.0
OD1 H:ASP42 3.6 25.2 1.0
O2G H:ATP400 3.6 25.9 1.0
PG H:ATP400 3.7 25.9 1.0
OD1 H:ASP201 3.9 26.6 1.0
CD H:GLU171 4.0 26.8 1.0
OE2 H:GLU171 4.0 26.8 1.0
OD2 H:ASP201 4.0 26.6 1.0
OD2 H:ASP42 4.1 25.2 1.0
CG2 H:VAL365 4.2 24.7 1.0
OE1 H:GLU171 4.2 26.8 1.0
CG H:ASP42 4.2 25.2 1.0
O1G H:ATP400 4.2 25.9 1.0
NZ H:LYS47 4.3 25.0 1.0
O H:HOH513 4.3 62.0 1.0
CG H:ASP201 4.4 26.6 1.0
CG H:GLU171 4.4 26.8 1.0
O H:HOH504 4.6 30.0 1.0
O H:HOH501 4.6 30.0 1.0
O1B H:ATP400 4.8 25.9 1.0
CA H:GLY203 4.9 23.5 1.0
PA H:ATP400 4.9 25.9 1.0
O3G H:ATP400 4.9 25.9 1.0
CB H:VAL365 4.9 24.7 1.0
CB H:GLU171 5.0 26.8 1.0

Calcium binding site 9 out of 12 in 8r2n

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Calcium binding site 9 out of 12 in the Structure of the Beer Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of the Beer Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Ca401

b:37.6
occ:1.00
O I:HOH513 1.2 30.0 1.0
O3B I:ATP400 2.5 25.9 1.0
O3A I:ATP400 3.3 25.9 1.0
PB I:ATP400 3.4 25.9 1.0
O2G I:ATP400 3.5 25.9 1.0
OD2 I:ASP201 3.6 25.9 1.0
O2B I:ATP400 3.6 25.9 1.0
PG I:ATP400 3.7 25.9 1.0
OD1 I:ASP42 3.8 26.3 1.0
OD1 I:ASP201 3.9 25.9 1.0
OE1 I:GLU171 3.9 25.8 1.0
CD I:GLU171 3.9 25.8 1.0
OE2 I:GLU171 4.0 25.8 1.0
CG2 I:VAL365 4.1 23.6 1.0
CG I:ASP201 4.2 25.9 1.0
O1G I:ATP400 4.3 25.9 1.0
O I:HOH512 4.3 62.0 1.0
OD2 I:ASP42 4.3 26.3 1.0
CG I:ASP42 4.5 26.3 1.0
O I:HOH504 4.5 30.0 1.0
NZ I:LYS47 4.5 24.4 1.0
CG I:GLU171 4.6 25.8 1.0
CA I:GLY203 4.7 23.8 1.0
O I:HOH503 4.7 30.0 1.0
O1B I:ATP400 4.8 25.9 1.0
O3G I:ATP400 4.8 25.9 1.0
PA I:ATP400 4.8 25.9 1.0
CB I:GLU171 5.0 25.8 1.0
CB I:VAL365 5.0 23.6 1.0

Calcium binding site 10 out of 12 in 8r2n

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Calcium binding site 10 out of 12 in the Structure of the Beer Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of the Beer Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Ca401

b:31.5
occ:1.00
O J:HOH507 1.1 30.0 1.0
O1G J:ATP400 2.3 27.2 1.0
O2B J:ATP400 2.7 27.2 1.0
O3B J:ATP400 2.9 27.2 1.0
PB J:ATP400 3.2 27.2 1.0
PG J:ATP400 3.2 27.2 1.0
O3A J:ATP400 3.3 27.2 1.0
OD1 J:ASP42 3.7 25.4 1.0
OD1 J:ASP201 3.9 26.6 1.0
O2G J:ATP400 4.0 27.2 1.0
OD2 J:ASP201 4.1 26.6 1.0
OD2 J:ASP42 4.1 25.4 1.0
CD J:GLU171 4.1 26.6 1.0
CG2 J:VAL365 4.1 23.3 1.0
OE1 J:GLU171 4.1 26.6 1.0
OE2 J:GLU171 4.1 26.6 1.0
O J:HOH515 4.3 62.0 1.0
CG J:ASP42 4.3 25.4 1.0
NZ J:LYS47 4.3 25.1 1.0
O3G J:ATP400 4.4 27.2 1.0
CG J:ASP201 4.4 26.6 1.0
CG J:GLU171 4.6 26.6 1.0
O1B J:ATP400 4.7 27.2 1.0
O J:HOH504 4.7 30.0 1.0
O J:HOH501 4.8 30.0 1.0
PA J:ATP400 4.8 27.2 1.0
CA J:GLY203 4.8 24.4 1.0
CB J:VAL365 4.9 23.3 1.0

Reference:

J.R.C.Bergeron, J.M.Koillman. A Family of Bacterial Actin Homologues Forms A 3-Stranded Tubular Structure. To Be Published.
Page generated: Thu Jul 10 06:49:21 2025

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