Calcium in PDB 8s3e: Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26
Other elements in 8s3e:
The structure of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26
(pdb code 8s3e). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26, PDB code: 8s3e:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 8s3e
Go back to
Calcium Binding Sites List in 8s3e
Calcium binding site 1 out
of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1205
b:79.8
occ:1.00
|
OD2
|
A:ASP367
|
2.3
|
74.1
|
1.0
|
O
|
A:SER533
|
2.3
|
80.1
|
1.0
|
OE1
|
A:GLU535
|
2.4
|
68.2
|
1.0
|
O
|
A:SER600
|
2.5
|
89.9
|
1.0
|
O
|
A:ARG514
|
2.6
|
73.7
|
1.0
|
OE2
|
A:GLU535
|
2.9
|
80.7
|
1.0
|
CD
|
A:GLU535
|
3.0
|
75.0
|
1.0
|
OG
|
A:SER533
|
3.3
|
87.4
|
1.0
|
C
|
A:SER533
|
3.3
|
77.3
|
1.0
|
CG
|
A:ASP367
|
3.4
|
74.3
|
1.0
|
C
|
A:SER600
|
3.4
|
85.0
|
1.0
|
CA
|
A:SER600
|
3.5
|
76.1
|
1.0
|
C
|
A:ARG514
|
3.8
|
73.2
|
1.0
|
OD1
|
A:ASP367
|
3.9
|
74.1
|
1.0
|
CA
|
A:SER533
|
4.0
|
73.3
|
1.0
|
CB
|
A:SER600
|
4.0
|
80.2
|
1.0
|
CB
|
A:SER533
|
4.2
|
79.7
|
1.0
|
N
|
A:ASN534
|
4.4
|
75.6
|
1.0
|
O
|
A:SER515
|
4.4
|
84.2
|
1.0
|
CG
|
A:GLU535
|
4.5
|
72.1
|
1.0
|
CB
|
A:ASP367
|
4.6
|
73.2
|
1.0
|
N
|
A:ARG514
|
4.6
|
73.2
|
1.0
|
C
|
A:SER515
|
4.6
|
86.4
|
1.0
|
OH
|
A:TYR537
|
4.6
|
90.7
|
1.0
|
N
|
A:ASP601
|
4.6
|
85.9
|
1.0
|
O
|
A:ALA599
|
4.7
|
76.6
|
1.0
|
N
|
A:SER515
|
4.7
|
79.8
|
1.0
|
CA
|
A:SER515
|
4.7
|
78.8
|
1.0
|
CA
|
A:ASN534
|
4.7
|
70.3
|
1.0
|
CA
|
A:ARG514
|
4.7
|
67.4
|
1.0
|
N
|
A:GLU535
|
4.8
|
83.9
|
1.0
|
N
|
A:SER600
|
4.8
|
71.0
|
1.0
|
OG
|
A:SER600
|
4.9
|
80.0
|
1.0
|
|
Calcium binding site 2 out
of 8 in 8s3e
Go back to
Calcium Binding Sites List in 8s3e
Calcium binding site 2 out
of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1206
b:72.4
occ:1.00
|
O
|
A:ASP892
|
2.3
|
67.4
|
1.0
|
OD2
|
A:ASP897
|
2.3
|
80.5
|
1.0
|
OD1
|
A:ASP897
|
2.3
|
86.7
|
1.0
|
O
|
A:GLN889
|
2.4
|
63.7
|
1.0
|
OD1
|
D:ASN449
|
2.5
|
81.1
|
1.0
|
CG
|
A:ASP897
|
2.6
|
83.2
|
1.0
|
OD1
|
A:ASP895
|
2.9
|
84.9
|
1.0
|
C
|
A:ASP892
|
3.5
|
70.6
|
1.0
|
C
|
A:GLN889
|
3.5
|
61.4
|
1.0
|
CG
|
D:ASN449
|
3.5
|
68.5
|
1.0
|
CG
|
A:ASP895
|
3.9
|
83.9
|
1.0
|
ND2
|
D:ASN449
|
4.0
|
65.4
|
1.0
|
CA
|
A:GLN889
|
4.1
|
65.3
|
1.0
|
O
|
A:ASP895
|
4.1
|
85.2
|
1.0
|
CB
|
A:ASP897
|
4.1
|
76.9
|
1.0
|
CA
|
A:GLN893
|
4.2
|
80.3
|
1.0
|
N
|
A:GLN893
|
4.3
|
74.9
|
1.0
|
OD2
|
A:ASP895
|
4.3
|
76.4
|
1.0
|
N
|
A:ASP892
|
4.5
|
64.7
|
1.0
|
CA
|
A:ASP892
|
4.5
|
66.4
|
1.0
|
CB
|
A:GLN889
|
4.5
|
65.3
|
1.0
|
N
|
A:PHE890
|
4.6
|
61.5
|
1.0
|
O
|
D:ASN449
|
4.7
|
67.4
|
1.0
|
C
|
A:GLN893
|
4.8
|
84.3
|
1.0
|
CB
|
D:ASN449
|
4.8
|
67.0
|
1.0
|
CA
|
A:PHE890
|
4.9
|
63.6
|
1.0
|
C
|
A:ASP895
|
4.9
|
83.7
|
1.0
|
N
|
A:ASP895
|
5.0
|
76.5
|
1.0
|
CB
|
A:ASP892
|
5.0
|
71.5
|
1.0
|
|
Calcium binding site 3 out
of 8 in 8s3e
Go back to
Calcium Binding Sites List in 8s3e
Calcium binding site 3 out
of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1207
b:79.8
occ:1.00
|
OD2
|
B:ASP367
|
2.3
|
74.1
|
1.0
|
O
|
B:SER533
|
2.3
|
80.1
|
1.0
|
OE1
|
B:GLU535
|
2.4
|
68.2
|
1.0
|
O
|
B:SER600
|
2.5
|
89.9
|
1.0
|
O
|
B:ARG514
|
2.6
|
73.7
|
1.0
|
OE2
|
B:GLU535
|
2.9
|
80.7
|
1.0
|
CD
|
B:GLU535
|
3.0
|
75.0
|
1.0
|
OG
|
B:SER533
|
3.3
|
87.4
|
1.0
|
C
|
B:SER533
|
3.3
|
77.3
|
1.0
|
CG
|
B:ASP367
|
3.4
|
74.3
|
1.0
|
C
|
B:SER600
|
3.4
|
85.0
|
1.0
|
CA
|
B:SER600
|
3.5
|
76.1
|
1.0
|
C
|
B:ARG514
|
3.8
|
73.2
|
1.0
|
OD1
|
B:ASP367
|
3.9
|
74.1
|
1.0
|
CA
|
B:SER533
|
4.0
|
73.3
|
1.0
|
CB
|
B:SER600
|
4.0
|
80.2
|
1.0
|
CB
|
B:SER533
|
4.2
|
79.7
|
1.0
|
N
|
B:ASN534
|
4.4
|
75.6
|
1.0
|
O
|
B:SER515
|
4.4
|
84.2
|
1.0
|
CG
|
B:GLU535
|
4.5
|
72.1
|
1.0
|
CB
|
B:ASP367
|
4.6
|
73.2
|
1.0
|
N
|
B:ARG514
|
4.6
|
73.2
|
1.0
|
C
|
B:SER515
|
4.6
|
86.4
|
1.0
|
OH
|
B:TYR537
|
4.6
|
90.7
|
1.0
|
N
|
B:ASP601
|
4.6
|
85.9
|
1.0
|
O
|
B:ALA599
|
4.7
|
76.6
|
1.0
|
N
|
B:SER515
|
4.7
|
79.8
|
1.0
|
CA
|
B:SER515
|
4.7
|
78.8
|
1.0
|
CA
|
B:ASN534
|
4.7
|
70.3
|
1.0
|
CA
|
B:ARG514
|
4.7
|
67.4
|
1.0
|
N
|
B:GLU535
|
4.8
|
83.9
|
1.0
|
N
|
B:SER600
|
4.8
|
71.0
|
1.0
|
OG
|
B:SER600
|
4.9
|
80.0
|
1.0
|
|
Calcium binding site 4 out
of 8 in 8s3e
Go back to
Calcium Binding Sites List in 8s3e
Calcium binding site 4 out
of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1208
b:72.4
occ:1.00
|
O
|
B:ASP892
|
2.3
|
67.4
|
1.0
|
OD2
|
B:ASP897
|
2.3
|
80.5
|
1.0
|
OD1
|
B:ASP897
|
2.3
|
86.7
|
1.0
|
O
|
B:GLN889
|
2.4
|
63.7
|
1.0
|
OD1
|
A:ASN449
|
2.6
|
81.1
|
1.0
|
CG
|
B:ASP897
|
2.6
|
83.2
|
1.0
|
OD1
|
B:ASP895
|
2.9
|
84.9
|
1.0
|
C
|
B:ASP892
|
3.5
|
70.6
|
1.0
|
C
|
B:GLN889
|
3.5
|
61.4
|
1.0
|
CG
|
A:ASN449
|
3.6
|
68.5
|
1.0
|
CG
|
B:ASP895
|
3.9
|
83.9
|
1.0
|
ND2
|
A:ASN449
|
4.1
|
65.4
|
1.0
|
CA
|
B:GLN889
|
4.1
|
65.3
|
1.0
|
O
|
B:ASP895
|
4.1
|
85.2
|
1.0
|
CB
|
B:ASP897
|
4.1
|
76.9
|
1.0
|
CA
|
B:GLN893
|
4.2
|
80.3
|
1.0
|
N
|
B:GLN893
|
4.3
|
74.9
|
1.0
|
OD2
|
B:ASP895
|
4.3
|
76.4
|
1.0
|
N
|
B:ASP892
|
4.5
|
64.7
|
1.0
|
CA
|
B:ASP892
|
4.5
|
66.4
|
1.0
|
CB
|
B:GLN889
|
4.5
|
65.3
|
1.0
|
N
|
B:PHE890
|
4.6
|
61.5
|
1.0
|
C
|
B:GLN893
|
4.8
|
84.3
|
1.0
|
O
|
A:ASN449
|
4.8
|
67.4
|
1.0
|
CA
|
B:PHE890
|
4.9
|
63.6
|
1.0
|
CB
|
A:ASN449
|
4.9
|
67.0
|
1.0
|
C
|
B:ASP895
|
4.9
|
83.7
|
1.0
|
N
|
B:ASP895
|
5.0
|
76.5
|
1.0
|
CB
|
B:ASP892
|
5.0
|
71.5
|
1.0
|
|
Calcium binding site 5 out
of 8 in 8s3e
Go back to
Calcium Binding Sites List in 8s3e
Calcium binding site 5 out
of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1207
b:79.8
occ:1.00
|
OD2
|
C:ASP367
|
2.3
|
74.1
|
1.0
|
O
|
C:SER533
|
2.3
|
80.1
|
1.0
|
OE1
|
C:GLU535
|
2.4
|
68.2
|
1.0
|
O
|
C:SER600
|
2.5
|
89.9
|
1.0
|
O
|
C:ARG514
|
2.6
|
73.7
|
1.0
|
OE2
|
C:GLU535
|
2.9
|
80.7
|
1.0
|
CD
|
C:GLU535
|
3.0
|
75.0
|
1.0
|
OG
|
C:SER533
|
3.3
|
87.4
|
1.0
|
C
|
C:SER533
|
3.3
|
77.3
|
1.0
|
CG
|
C:ASP367
|
3.4
|
74.3
|
1.0
|
C
|
C:SER600
|
3.4
|
85.0
|
1.0
|
CA
|
C:SER600
|
3.5
|
76.1
|
1.0
|
C
|
C:ARG514
|
3.8
|
73.2
|
1.0
|
OD1
|
C:ASP367
|
3.9
|
74.1
|
1.0
|
CA
|
C:SER533
|
4.0
|
73.3
|
1.0
|
CB
|
C:SER600
|
4.0
|
80.2
|
1.0
|
CB
|
C:SER533
|
4.2
|
79.7
|
1.0
|
N
|
C:ASN534
|
4.4
|
75.6
|
1.0
|
O
|
C:SER515
|
4.4
|
84.2
|
1.0
|
CG
|
C:GLU535
|
4.5
|
72.1
|
1.0
|
CB
|
C:ASP367
|
4.6
|
73.2
|
1.0
|
N
|
C:ARG514
|
4.6
|
73.2
|
1.0
|
C
|
C:SER515
|
4.6
|
86.4
|
1.0
|
OH
|
C:TYR537
|
4.6
|
90.7
|
1.0
|
N
|
C:ASP601
|
4.6
|
85.9
|
1.0
|
O
|
C:ALA599
|
4.7
|
76.6
|
1.0
|
N
|
C:SER515
|
4.7
|
79.8
|
1.0
|
CA
|
C:SER515
|
4.7
|
78.8
|
1.0
|
CA
|
C:ASN534
|
4.7
|
70.3
|
1.0
|
CA
|
C:ARG514
|
4.7
|
67.4
|
1.0
|
N
|
C:GLU535
|
4.8
|
83.9
|
1.0
|
N
|
C:SER600
|
4.8
|
71.0
|
1.0
|
OG
|
C:SER600
|
4.9
|
80.0
|
1.0
|
|
Calcium binding site 6 out
of 8 in 8s3e
Go back to
Calcium Binding Sites List in 8s3e
Calcium binding site 6 out
of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1208
b:72.4
occ:1.00
|
O
|
C:ASP892
|
2.3
|
67.4
|
1.0
|
OD2
|
C:ASP897
|
2.3
|
80.5
|
1.0
|
OD1
|
C:ASP897
|
2.3
|
86.7
|
1.0
|
O
|
C:GLN889
|
2.4
|
63.7
|
1.0
|
OD1
|
B:ASN449
|
2.4
|
81.1
|
1.0
|
CG
|
C:ASP897
|
2.6
|
83.2
|
1.0
|
OD1
|
C:ASP895
|
2.9
|
84.9
|
1.0
|
CG
|
B:ASN449
|
3.4
|
68.5
|
1.0
|
C
|
C:ASP892
|
3.5
|
70.6
|
1.0
|
C
|
C:GLN889
|
3.5
|
61.4
|
1.0
|
ND2
|
B:ASN449
|
3.9
|
65.4
|
1.0
|
CG
|
C:ASP895
|
3.9
|
83.9
|
1.0
|
CA
|
C:GLN889
|
4.1
|
65.3
|
1.0
|
O
|
C:ASP895
|
4.1
|
85.2
|
1.0
|
CB
|
C:ASP897
|
4.1
|
76.9
|
1.0
|
CA
|
C:GLN893
|
4.2
|
80.3
|
1.0
|
N
|
C:GLN893
|
4.3
|
74.9
|
1.0
|
OD2
|
C:ASP895
|
4.3
|
76.4
|
1.0
|
N
|
C:ASP892
|
4.5
|
64.7
|
1.0
|
CA
|
C:ASP892
|
4.5
|
66.4
|
1.0
|
CB
|
C:GLN889
|
4.5
|
65.3
|
1.0
|
O
|
B:ASN449
|
4.6
|
67.4
|
1.0
|
N
|
C:PHE890
|
4.6
|
61.5
|
1.0
|
CB
|
B:ASN449
|
4.8
|
67.0
|
1.0
|
C
|
C:GLN893
|
4.8
|
84.3
|
1.0
|
CA
|
C:PHE890
|
4.9
|
63.6
|
1.0
|
C
|
C:ASP895
|
4.9
|
83.7
|
1.0
|
N
|
C:ASP895
|
5.0
|
76.5
|
1.0
|
CB
|
C:ASP892
|
5.0
|
71.5
|
1.0
|
|
Calcium binding site 7 out
of 8 in 8s3e
Go back to
Calcium Binding Sites List in 8s3e
Calcium binding site 7 out
of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1207
b:79.8
occ:1.00
|
OD2
|
D:ASP367
|
2.3
|
74.1
|
1.0
|
O
|
D:SER533
|
2.3
|
80.1
|
1.0
|
OE1
|
D:GLU535
|
2.4
|
68.2
|
1.0
|
O
|
D:SER600
|
2.5
|
89.9
|
1.0
|
O
|
D:ARG514
|
2.6
|
73.7
|
1.0
|
OE2
|
D:GLU535
|
2.9
|
80.7
|
1.0
|
CD
|
D:GLU535
|
3.0
|
75.0
|
1.0
|
OG
|
D:SER533
|
3.3
|
87.4
|
1.0
|
C
|
D:SER533
|
3.3
|
77.3
|
1.0
|
CG
|
D:ASP367
|
3.4
|
74.3
|
1.0
|
C
|
D:SER600
|
3.4
|
85.0
|
1.0
|
CA
|
D:SER600
|
3.5
|
76.1
|
1.0
|
C
|
D:ARG514
|
3.8
|
73.2
|
1.0
|
OD1
|
D:ASP367
|
3.9
|
74.1
|
1.0
|
CA
|
D:SER533
|
4.0
|
73.3
|
1.0
|
CB
|
D:SER600
|
4.0
|
80.2
|
1.0
|
CB
|
D:SER533
|
4.2
|
79.7
|
1.0
|
N
|
D:ASN534
|
4.4
|
75.6
|
1.0
|
O
|
D:SER515
|
4.4
|
84.2
|
1.0
|
CG
|
D:GLU535
|
4.5
|
72.1
|
1.0
|
CB
|
D:ASP367
|
4.6
|
73.2
|
1.0
|
N
|
D:ARG514
|
4.6
|
73.2
|
1.0
|
C
|
D:SER515
|
4.6
|
86.4
|
1.0
|
OH
|
D:TYR537
|
4.6
|
90.7
|
1.0
|
N
|
D:ASP601
|
4.6
|
85.9
|
1.0
|
O
|
D:ALA599
|
4.7
|
76.6
|
1.0
|
N
|
D:SER515
|
4.7
|
79.8
|
1.0
|
CA
|
D:SER515
|
4.7
|
78.8
|
1.0
|
CA
|
D:ASN534
|
4.7
|
70.3
|
1.0
|
CA
|
D:ARG514
|
4.7
|
67.4
|
1.0
|
N
|
D:GLU535
|
4.8
|
83.9
|
1.0
|
N
|
D:SER600
|
4.8
|
71.0
|
1.0
|
OG
|
D:SER600
|
4.9
|
80.0
|
1.0
|
|
Calcium binding site 8 out
of 8 in 8s3e
Go back to
Calcium Binding Sites List in 8s3e
Calcium binding site 8 out
of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1208
b:72.4
occ:1.00
|
O
|
D:ASP892
|
2.3
|
67.4
|
1.0
|
OD2
|
D:ASP897
|
2.3
|
80.5
|
1.0
|
OD1
|
D:ASP897
|
2.3
|
86.7
|
1.0
|
O
|
D:GLN889
|
2.4
|
63.7
|
1.0
|
OD1
|
C:ASN449
|
2.5
|
81.1
|
1.0
|
CG
|
D:ASP897
|
2.6
|
83.2
|
1.0
|
OD1
|
D:ASP895
|
2.9
|
84.9
|
1.0
|
C
|
D:ASP892
|
3.5
|
70.6
|
1.0
|
C
|
D:GLN889
|
3.5
|
61.4
|
1.0
|
CG
|
C:ASN449
|
3.5
|
68.5
|
1.0
|
CG
|
D:ASP895
|
3.9
|
83.9
|
1.0
|
ND2
|
C:ASN449
|
3.9
|
65.4
|
1.0
|
CA
|
D:GLN889
|
4.1
|
65.3
|
1.0
|
O
|
D:ASP895
|
4.1
|
85.2
|
1.0
|
CB
|
D:ASP897
|
4.1
|
76.9
|
1.0
|
CA
|
D:GLN893
|
4.2
|
80.3
|
1.0
|
N
|
D:GLN893
|
4.3
|
74.9
|
1.0
|
OD2
|
D:ASP895
|
4.3
|
76.4
|
1.0
|
N
|
D:ASP892
|
4.5
|
64.7
|
1.0
|
CA
|
D:ASP892
|
4.5
|
66.4
|
1.0
|
CB
|
D:GLN889
|
4.5
|
65.3
|
1.0
|
N
|
D:PHE890
|
4.6
|
61.5
|
1.0
|
C
|
D:GLN893
|
4.8
|
84.3
|
1.0
|
O
|
C:ASN449
|
4.8
|
67.4
|
1.0
|
CB
|
C:ASN449
|
4.8
|
67.0
|
1.0
|
CA
|
D:PHE890
|
4.9
|
63.6
|
1.0
|
C
|
D:ASP895
|
4.9
|
83.7
|
1.0
|
N
|
D:ASP895
|
5.0
|
76.5
|
1.0
|
CB
|
D:ASP892
|
5.0
|
71.5
|
1.0
|
|
Reference:
M.Redhardt,
S.Raunser,
T.Raisch.
Cryo-Em Structure of the SLO1 Potassium Channel with the Auxiliary Gamma 1 Subunit Suggests A Mechanism For Depolarization-Independent Activation. Febs Lett. 2024.
ISSN: ISSN 0014-5793
PubMed: 38553946
DOI: 10.1002/1873-3468.14863
Page generated: Fri Jul 19 11:22:19 2024
|