Calcium in PDB 8s3e: Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26

Other elements in 8s3e:

The structure of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 also contains other interesting chemical elements:

Potassium (K) 4 atoms
Magnesium (Mg) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 (pdb code 8s3e). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26, PDB code: 8s3e:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 8s3e

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Calcium binding site 1 out of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1205

b:79.8
occ:1.00
OD2 A:ASP367 2.3 74.1 1.0
O A:SER533 2.3 80.1 1.0
OE1 A:GLU535 2.4 68.2 1.0
O A:SER600 2.5 89.9 1.0
O A:ARG514 2.6 73.7 1.0
OE2 A:GLU535 2.9 80.7 1.0
CD A:GLU535 3.0 75.0 1.0
OG A:SER533 3.3 87.4 1.0
C A:SER533 3.3 77.3 1.0
CG A:ASP367 3.4 74.3 1.0
C A:SER600 3.4 85.0 1.0
CA A:SER600 3.5 76.1 1.0
C A:ARG514 3.8 73.2 1.0
OD1 A:ASP367 3.9 74.1 1.0
CA A:SER533 4.0 73.3 1.0
CB A:SER600 4.0 80.2 1.0
CB A:SER533 4.2 79.7 1.0
N A:ASN534 4.4 75.6 1.0
O A:SER515 4.4 84.2 1.0
CG A:GLU535 4.5 72.1 1.0
CB A:ASP367 4.6 73.2 1.0
N A:ARG514 4.6 73.2 1.0
C A:SER515 4.6 86.4 1.0
OH A:TYR537 4.6 90.7 1.0
N A:ASP601 4.6 85.9 1.0
O A:ALA599 4.7 76.6 1.0
N A:SER515 4.7 79.8 1.0
CA A:SER515 4.7 78.8 1.0
CA A:ASN534 4.7 70.3 1.0
CA A:ARG514 4.7 67.4 1.0
N A:GLU535 4.8 83.9 1.0
N A:SER600 4.8 71.0 1.0
OG A:SER600 4.9 80.0 1.0

Calcium binding site 2 out of 8 in 8s3e

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Calcium binding site 2 out of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1206

b:72.4
occ:1.00
O A:ASP892 2.3 67.4 1.0
OD2 A:ASP897 2.3 80.5 1.0
OD1 A:ASP897 2.3 86.7 1.0
O A:GLN889 2.4 63.7 1.0
OD1 D:ASN449 2.5 81.1 1.0
CG A:ASP897 2.6 83.2 1.0
OD1 A:ASP895 2.9 84.9 1.0
C A:ASP892 3.5 70.6 1.0
C A:GLN889 3.5 61.4 1.0
CG D:ASN449 3.5 68.5 1.0
CG A:ASP895 3.9 83.9 1.0
ND2 D:ASN449 4.0 65.4 1.0
CA A:GLN889 4.1 65.3 1.0
O A:ASP895 4.1 85.2 1.0
CB A:ASP897 4.1 76.9 1.0
CA A:GLN893 4.2 80.3 1.0
N A:GLN893 4.3 74.9 1.0
OD2 A:ASP895 4.3 76.4 1.0
N A:ASP892 4.5 64.7 1.0
CA A:ASP892 4.5 66.4 1.0
CB A:GLN889 4.5 65.3 1.0
N A:PHE890 4.6 61.5 1.0
O D:ASN449 4.7 67.4 1.0
C A:GLN893 4.8 84.3 1.0
CB D:ASN449 4.8 67.0 1.0
CA A:PHE890 4.9 63.6 1.0
C A:ASP895 4.9 83.7 1.0
N A:ASP895 5.0 76.5 1.0
CB A:ASP892 5.0 71.5 1.0

Calcium binding site 3 out of 8 in 8s3e

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Calcium binding site 3 out of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1207

b:79.8
occ:1.00
OD2 B:ASP367 2.3 74.1 1.0
O B:SER533 2.3 80.1 1.0
OE1 B:GLU535 2.4 68.2 1.0
O B:SER600 2.5 89.9 1.0
O B:ARG514 2.6 73.7 1.0
OE2 B:GLU535 2.9 80.7 1.0
CD B:GLU535 3.0 75.0 1.0
OG B:SER533 3.3 87.4 1.0
C B:SER533 3.3 77.3 1.0
CG B:ASP367 3.4 74.3 1.0
C B:SER600 3.4 85.0 1.0
CA B:SER600 3.5 76.1 1.0
C B:ARG514 3.8 73.2 1.0
OD1 B:ASP367 3.9 74.1 1.0
CA B:SER533 4.0 73.3 1.0
CB B:SER600 4.0 80.2 1.0
CB B:SER533 4.2 79.7 1.0
N B:ASN534 4.4 75.6 1.0
O B:SER515 4.4 84.2 1.0
CG B:GLU535 4.5 72.1 1.0
CB B:ASP367 4.6 73.2 1.0
N B:ARG514 4.6 73.2 1.0
C B:SER515 4.6 86.4 1.0
OH B:TYR537 4.6 90.7 1.0
N B:ASP601 4.6 85.9 1.0
O B:ALA599 4.7 76.6 1.0
N B:SER515 4.7 79.8 1.0
CA B:SER515 4.7 78.8 1.0
CA B:ASN534 4.7 70.3 1.0
CA B:ARG514 4.7 67.4 1.0
N B:GLU535 4.8 83.9 1.0
N B:SER600 4.8 71.0 1.0
OG B:SER600 4.9 80.0 1.0

Calcium binding site 4 out of 8 in 8s3e

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Calcium binding site 4 out of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1208

b:72.4
occ:1.00
O B:ASP892 2.3 67.4 1.0
OD2 B:ASP897 2.3 80.5 1.0
OD1 B:ASP897 2.3 86.7 1.0
O B:GLN889 2.4 63.7 1.0
OD1 A:ASN449 2.6 81.1 1.0
CG B:ASP897 2.6 83.2 1.0
OD1 B:ASP895 2.9 84.9 1.0
C B:ASP892 3.5 70.6 1.0
C B:GLN889 3.5 61.4 1.0
CG A:ASN449 3.6 68.5 1.0
CG B:ASP895 3.9 83.9 1.0
ND2 A:ASN449 4.1 65.4 1.0
CA B:GLN889 4.1 65.3 1.0
O B:ASP895 4.1 85.2 1.0
CB B:ASP897 4.1 76.9 1.0
CA B:GLN893 4.2 80.3 1.0
N B:GLN893 4.3 74.9 1.0
OD2 B:ASP895 4.3 76.4 1.0
N B:ASP892 4.5 64.7 1.0
CA B:ASP892 4.5 66.4 1.0
CB B:GLN889 4.5 65.3 1.0
N B:PHE890 4.6 61.5 1.0
C B:GLN893 4.8 84.3 1.0
O A:ASN449 4.8 67.4 1.0
CA B:PHE890 4.9 63.6 1.0
CB A:ASN449 4.9 67.0 1.0
C B:ASP895 4.9 83.7 1.0
N B:ASP895 5.0 76.5 1.0
CB B:ASP892 5.0 71.5 1.0

Calcium binding site 5 out of 8 in 8s3e

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Calcium binding site 5 out of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1207

b:79.8
occ:1.00
OD2 C:ASP367 2.3 74.1 1.0
O C:SER533 2.3 80.1 1.0
OE1 C:GLU535 2.4 68.2 1.0
O C:SER600 2.5 89.9 1.0
O C:ARG514 2.6 73.7 1.0
OE2 C:GLU535 2.9 80.7 1.0
CD C:GLU535 3.0 75.0 1.0
OG C:SER533 3.3 87.4 1.0
C C:SER533 3.3 77.3 1.0
CG C:ASP367 3.4 74.3 1.0
C C:SER600 3.4 85.0 1.0
CA C:SER600 3.5 76.1 1.0
C C:ARG514 3.8 73.2 1.0
OD1 C:ASP367 3.9 74.1 1.0
CA C:SER533 4.0 73.3 1.0
CB C:SER600 4.0 80.2 1.0
CB C:SER533 4.2 79.7 1.0
N C:ASN534 4.4 75.6 1.0
O C:SER515 4.4 84.2 1.0
CG C:GLU535 4.5 72.1 1.0
CB C:ASP367 4.6 73.2 1.0
N C:ARG514 4.6 73.2 1.0
C C:SER515 4.6 86.4 1.0
OH C:TYR537 4.6 90.7 1.0
N C:ASP601 4.6 85.9 1.0
O C:ALA599 4.7 76.6 1.0
N C:SER515 4.7 79.8 1.0
CA C:SER515 4.7 78.8 1.0
CA C:ASN534 4.7 70.3 1.0
CA C:ARG514 4.7 67.4 1.0
N C:GLU535 4.8 83.9 1.0
N C:SER600 4.8 71.0 1.0
OG C:SER600 4.9 80.0 1.0

Calcium binding site 6 out of 8 in 8s3e

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Calcium binding site 6 out of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1208

b:72.4
occ:1.00
O C:ASP892 2.3 67.4 1.0
OD2 C:ASP897 2.3 80.5 1.0
OD1 C:ASP897 2.3 86.7 1.0
O C:GLN889 2.4 63.7 1.0
OD1 B:ASN449 2.4 81.1 1.0
CG C:ASP897 2.6 83.2 1.0
OD1 C:ASP895 2.9 84.9 1.0
CG B:ASN449 3.4 68.5 1.0
C C:ASP892 3.5 70.6 1.0
C C:GLN889 3.5 61.4 1.0
ND2 B:ASN449 3.9 65.4 1.0
CG C:ASP895 3.9 83.9 1.0
CA C:GLN889 4.1 65.3 1.0
O C:ASP895 4.1 85.2 1.0
CB C:ASP897 4.1 76.9 1.0
CA C:GLN893 4.2 80.3 1.0
N C:GLN893 4.3 74.9 1.0
OD2 C:ASP895 4.3 76.4 1.0
N C:ASP892 4.5 64.7 1.0
CA C:ASP892 4.5 66.4 1.0
CB C:GLN889 4.5 65.3 1.0
O B:ASN449 4.6 67.4 1.0
N C:PHE890 4.6 61.5 1.0
CB B:ASN449 4.8 67.0 1.0
C C:GLN893 4.8 84.3 1.0
CA C:PHE890 4.9 63.6 1.0
C C:ASP895 4.9 83.7 1.0
N C:ASP895 5.0 76.5 1.0
CB C:ASP892 5.0 71.5 1.0

Calcium binding site 7 out of 8 in 8s3e

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Calcium binding site 7 out of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1207

b:79.8
occ:1.00
OD2 D:ASP367 2.3 74.1 1.0
O D:SER533 2.3 80.1 1.0
OE1 D:GLU535 2.4 68.2 1.0
O D:SER600 2.5 89.9 1.0
O D:ARG514 2.6 73.7 1.0
OE2 D:GLU535 2.9 80.7 1.0
CD D:GLU535 3.0 75.0 1.0
OG D:SER533 3.3 87.4 1.0
C D:SER533 3.3 77.3 1.0
CG D:ASP367 3.4 74.3 1.0
C D:SER600 3.4 85.0 1.0
CA D:SER600 3.5 76.1 1.0
C D:ARG514 3.8 73.2 1.0
OD1 D:ASP367 3.9 74.1 1.0
CA D:SER533 4.0 73.3 1.0
CB D:SER600 4.0 80.2 1.0
CB D:SER533 4.2 79.7 1.0
N D:ASN534 4.4 75.6 1.0
O D:SER515 4.4 84.2 1.0
CG D:GLU535 4.5 72.1 1.0
CB D:ASP367 4.6 73.2 1.0
N D:ARG514 4.6 73.2 1.0
C D:SER515 4.6 86.4 1.0
OH D:TYR537 4.6 90.7 1.0
N D:ASP601 4.6 85.9 1.0
O D:ALA599 4.7 76.6 1.0
N D:SER515 4.7 79.8 1.0
CA D:SER515 4.7 78.8 1.0
CA D:ASN534 4.7 70.3 1.0
CA D:ARG514 4.7 67.4 1.0
N D:GLU535 4.8 83.9 1.0
N D:SER600 4.8 71.0 1.0
OG D:SER600 4.9 80.0 1.0

Calcium binding site 8 out of 8 in 8s3e

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Calcium binding site 8 out of 8 in the Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Rabbit SLO1 in Complex with GAMMA1/LRRC26 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1208

b:72.4
occ:1.00
O D:ASP892 2.3 67.4 1.0
OD2 D:ASP897 2.3 80.5 1.0
OD1 D:ASP897 2.3 86.7 1.0
O D:GLN889 2.4 63.7 1.0
OD1 C:ASN449 2.5 81.1 1.0
CG D:ASP897 2.6 83.2 1.0
OD1 D:ASP895 2.9 84.9 1.0
C D:ASP892 3.5 70.6 1.0
C D:GLN889 3.5 61.4 1.0
CG C:ASN449 3.5 68.5 1.0
CG D:ASP895 3.9 83.9 1.0
ND2 C:ASN449 3.9 65.4 1.0
CA D:GLN889 4.1 65.3 1.0
O D:ASP895 4.1 85.2 1.0
CB D:ASP897 4.1 76.9 1.0
CA D:GLN893 4.2 80.3 1.0
N D:GLN893 4.3 74.9 1.0
OD2 D:ASP895 4.3 76.4 1.0
N D:ASP892 4.5 64.7 1.0
CA D:ASP892 4.5 66.4 1.0
CB D:GLN889 4.5 65.3 1.0
N D:PHE890 4.6 61.5 1.0
C D:GLN893 4.8 84.3 1.0
O C:ASN449 4.8 67.4 1.0
CB C:ASN449 4.8 67.0 1.0
CA D:PHE890 4.9 63.6 1.0
C D:ASP895 4.9 83.7 1.0
N D:ASP895 5.0 76.5 1.0
CB D:ASP892 5.0 71.5 1.0

Reference:

M.Redhardt, S.Raunser, T.Raisch. Cryo-Em Structure of the SLO1 Potassium Channel with the Auxiliary Gamma 1 Subunit Suggests A Mechanism For Depolarization-Independent Activation. Febs Lett. 2024.
ISSN: ISSN 0014-5793
PubMed: 38553946
DOI: 10.1002/1873-3468.14863
Page generated: Fri Jul 19 11:22:19 2024

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