Calcium in PDB 8ts3: Cryo-Em Structure of Human MRS2 with CA2+

The binding sites of Calcium atom in the Cryo-Em Structure of Human MRS2 with CA2+ (pdb code 8ts3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Cryo-Em Structure of Human MRS2 with CA2+, PDB code: 8ts3:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in the Cryo-Em Structure of Human MRS2 with CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Human MRS2 with CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:30.0 occ:1.00 HD22 D:ASN362 3.4 189.0 1.0 HD22 C:ASN362 3.4 189.0 1.0 HD22 E:ASN362 3.4 189.0 1.0 HD22 B:ASN362 3.5 189.0 1.0 HD22 A:ASN362 3.5 189.0 1.0 OD1 E:ASN362 3.8 190.2 1.0 OD1 D:ASN362 3.8 190.2 1.0 OD1 A:ASN362 3.8 190.2 1.0 OD1 C:ASN362 3.8 190.2 1.0 OD1 B:ASN362 3.8 190.2 1.0 ND2 D:ASN362 4.1 187.8 1.0 ND2 E:ASN362 4.2 187.8 1.0 ND2 C:ASN362 4.2 187.8 1.0 ND2 A:ASN362 4.2 187.8 1.0 ND2 B:ASN362 4.2 187.8 1.0 CG D:ASN362 4.4 189.7 1.0 CG E:ASN362 4.4 189.7 1.0 CG C:ASN362 4.4 189.7 1.0 CG A:ASN362 4.4 189.7 1.0 CG B:ASN362 4.5 189.7 1.0 HD21 D:ASN362 4.9 188.8 1.0 HD21 C:ASN362 4.9 188.8 1.0 HD21 E:ASN362 4.9 188.8 1.0 HD21 B:ASN362 5.0 188.8 1.0 HD21 A:ASN362 5.0 188.8 1.0

Calcium binding site 2 out of 7 in the Cryo-Em Structure of Human MRS2 with CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Human MRS2 with CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca602 b:30.0 occ:1.00 HH21 A:ARG332 4.6 112.7 1.0 HH21 B:ARG332 4.6 112.7 1.0 HH21 E:ARG332 4.6 112.7 1.0 HH21 C:ARG332 4.6 112.7 1.0 HH21 D:ARG332 4.6 112.7 1.0 OD2 A:ASP329 5.0 128.8 1.0 OD2 B:ASP329 5.0 128.8 1.0 OD2 E:ASP329 5.0 128.8 1.0 OD2 C:ASP329 5.0 128.8 1.0 OD2 D:ASP329 5.0 128.8 1.0

Calcium binding site 3 out of 7 in the Cryo-Em Structure of Human MRS2 with CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of Human MRS2 with CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca603 b:30.0 occ:1.00 HB3 A:GLU243 3.7 118.1 1.0 HG2 A:GLU243 4.0 118.8 1.0 OD1 A:ASP247 4.1 134.3 1.0 OE2 A:GLU138 4.5 140.0 1.0 CB A:GLU243 4.5 116.0 1.0 CG A:GLU243 4.5 120.7 1.0 OE2 E:GLU312 4.5 122.6 1.0 CD A:GLU243 4.6 125.8 1.0 OE1 A:GLU243 4.7 128.6 1.0 HA A:GLU243 4.7 118.4 1.0 OE1 E:GLU312 4.8 122.0 1.0 OD2 A:ASP247 4.8 127.1 1.0 CG A:ASP247 4.9 129.9 1.0

Calcium binding site 4 out of 7 in the Cryo-Em Structure of Human MRS2 with CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of Human MRS2 with CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca601 b:30.0 occ:1.00 HB3 B:GLU243 3.7 118.1 1.0 HG2 B:GLU243 4.0 118.8 1.0 OD1 B:ASP247 4.2 134.3 1.0 OE2 B:GLU138 4.5 140.0 1.0 CB B:GLU243 4.5 116.0 1.0 CG B:GLU243 4.5 120.7 1.0 OE2 A:GLU312 4.6 122.6 1.0 CD B:GLU243 4.6 125.8 1.0 OE1 B:GLU243 4.7 128.6 1.0 OE1 A:GLU312 4.8 122.0 1.0 HA B:GLU243 4.8 118.4 1.0 OD2 B:ASP247 4.9 127.1 1.0 CG B:ASP247 5.0 129.9 1.0

Calcium binding site 5 out of 7 in the Cryo-Em Structure of Human MRS2 with CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of Human MRS2 with CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca601 b:30.0 occ:1.00 HB3 C:GLU243 3.8 118.1 1.0 OD1 C:ASP247 4.1 134.3 1.0 HG2 C:GLU243 4.1 118.8 1.0 OE2 C:GLU138 4.2 140.0 1.0 CB C:GLU243 4.6 116.0 1.0 CG C:GLU243 4.6 120.7 1.0 CD C:GLU243 4.6 125.8 1.0 OE1 C:GLU243 4.7 128.6 1.0 OD2 C:ASP247 4.8 127.1 1.0 OE2 B:GLU312 4.8 122.6 1.0 CD C:GLU138 4.9 139.8 1.0 CG C:ASP247 4.9 129.9 1.0 HA C:GLU243 4.9 118.4 1.0

Calcium binding site 6 out of 7 in the Cryo-Em Structure of Human MRS2 with CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of Human MRS2 with CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca601 b:30.0 occ:1.00 HB3 D:GLU243 3.8 118.1 1.0 HG2 D:GLU243 4.0 118.8 1.0 OD1 D:ASP247 4.2 134.3 1.0 OE2 C:GLU312 4.4 122.6 1.0 CG D:GLU243 4.6 120.7 1.0 CB D:GLU243 4.6 116.0 1.0 OE2 D:GLU138 4.6 140.0 1.0 CD D:GLU243 4.6 125.8 1.0 OE1 C:GLU312 4.6 122.0 1.0 HA D:GLU243 4.8 118.4 1.0 OE1 D:GLU243 4.8 128.6 1.0 OD2 D:ASP247 5.0 127.1 1.0

Calcium binding site 7 out of 7 in the Cryo-Em Structure of Human MRS2 with CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of Human MRS2 with CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca601 b:30.0 occ:1.00 HB3 E:GLU243 3.7 118.1 1.0 OD1 E:ASP247 4.0 134.3 1.0 HG2 E:GLU243 4.1 118.8 1.0 OE2 E:GLU138 4.3 140.0 1.0 CB E:GLU243 4.5 116.0 1.0 CG E:GLU243 4.6 120.7 1.0 OE2 D:GLU312 4.6 122.6 1.0 CD E:GLU243 4.7 125.8 1.0 OD2 E:ASP247 4.7 127.1 1.0 OE1 E:GLU243 4.8 128.6 1.0 CG E:ASP247 4.8 129.9 1.0 HA E:GLU243 4.8 118.4 1.0 OE1 D:GLU312 4.9 122.0 1.0 CD E:GLU138 4.9 139.8 1.0

Z.He, Y.Tu, C.Tsai, J.W.Mount, J.Zhang, M.Tsai, P.Yuan. Human Mitochondrial MRS2 Is A CA2+-Regulated Nonselective Cation Channel To Be Published.