Calcium in PDB 8uws: Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43

The binding sites of Calcium atom in the Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43 (pdb code 8uws). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43, PDB code: 8uws:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca601 b:30.0 occ:1.00 O C:GLY363 2.5 64.7 1.0 OD2 C:ASP529 2.5 52.8 1.0 O C:ASP334 2.6 67.3 1.0 O C:ASP529 3.4 56.1 1.0 C C:GLY363 3.5 59.8 1.0 CG C:ASP529 3.8 58.6 1.0 C C:ASP334 3.8 65.4 1.0 CA C:GLY363 3.8 54.6 1.0 OD1 C:ASP336 4.0 72.0 1.0 CB C:ASP334 4.2 59.0 1.0 C C:ASP529 4.3 53.4 1.0 CA C:ASP334 4.4 59.3 1.0 OD1 C:ASP529 4.4 61.1 1.0 O C:PHE335 4.6 58.2 1.0 CA C:ASP529 4.6 50.6 1.0 CG C:ASP336 4.7 72.6 1.0 N C:TYR364 4.7 49.6 1.0 C C:PHE335 4.8 52.9 1.0 CB C:ASP529 4.8 54.4 1.0 N C:PHE335 4.8 53.9 1.0 OD2 C:ASP336 5.0 74.8 1.0

Calcium binding site 2 out of 4 in the Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43 within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca601 b:30.0 occ:1.00 O D:ASP334 2.5 65.9 1.0 OD2 D:ASP529 2.6 52.4 1.0 O D:GLY363 2.9 67.4 1.0 O D:ASP529 3.3 57.9 1.0 C D:ASP334 3.5 64.7 1.0 CG D:ASP529 3.8 60.0 1.0 CB D:ASP334 3.8 58.5 1.0 CA D:ASP334 3.9 57.9 1.0 C D:GLY363 3.9 60.5 1.0 OD1 D:ASP336 4.0 70.1 1.0 CA D:GLY363 4.2 54.6 1.0 C D:ASP529 4.2 56.5 1.0 OD1 D:ASP529 4.4 63.7 1.0 CG D:ASP334 4.6 65.6 1.0 CA D:ASP529 4.7 51.3 1.0 OD2 D:ASP334 4.7 65.7 1.0 CG D:ASP336 4.7 69.9 1.0 N D:PHE335 4.7 57.4 1.0 CB D:ASP529 4.8 54.6 1.0 OD2 D:ASP336 4.9 71.2 1.0

Calcium binding site 3 out of 4 in the Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:30.0 occ:1.00 O A:GLY363 2.3 63.8 1.0 O A:ASP334 2.3 65.8 1.0 OD2 A:ASP529 2.8 56.0 1.0 O A:ASP529 2.9 55.3 1.0 C A:GLY363 3.4 55.3 1.0 C A:ASP334 3.5 64.8 1.0 OD1 A:ASP336 3.8 72.1 1.0 CG A:ASP529 3.8 56.1 1.0 C A:ASP529 3.9 52.7 1.0 CA A:GLY363 3.9 51.0 1.0 CA A:ASP334 4.2 59.4 1.0 CB A:ASP334 4.3 61.0 1.0 O A:PHE335 4.3 58.1 1.0 CA A:ASP529 4.3 46.3 1.0 OD1 A:ASP529 4.5 58.1 1.0 N A:TYR364 4.5 47.5 1.0 N A:PHE335 4.5 54.6 1.0 C A:PHE335 4.6 52.4 1.0 CB A:PHE335 4.6 47.6 1.0 CB A:ASP529 4.7 51.1 1.0 CG A:ASP336 4.7 71.1 1.0 CG A:ASP334 4.7 66.2 1.0 CA A:PHE335 4.8 49.5 1.0 CA A:TYR364 4.9 44.8 1.0

Calcium binding site 4 out of 4 in the Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca601 b:30.0 occ:1.00 O B:ASP334 2.5 68.4 1.0 OD2 B:ASP529 2.6 59.1 1.0 O B:GLY363 2.7 67.8 1.0 O B:ASP529 3.0 59.7 1.0 OD1 B:ASP336 3.5 76.8 1.0 C B:ASP334 3.6 66.2 1.0 CG B:ASP529 3.7 61.3 1.0 C B:GLY363 3.8 60.9 1.0 C B:ASP529 4.0 58.6 1.0 CA B:ASP334 4.1 61.8 1.0 CB B:ASP334 4.1 61.3 1.0 CA B:GLY363 4.2 56.5 1.0 OD1 B:ASP529 4.5 62.6 1.0 CG B:ASP334 4.5 67.0 1.0 CA B:ASP529 4.5 52.2 1.0 OD1 B:ASP334 4.5 67.3 1.0 CG B:ASP336 4.7 75.3 1.0 CB B:ASP529 4.7 57.0 1.0 N B:PHE335 4.7 58.2 1.0 C B:PHE335 4.9 57.6 1.0 O B:PHE335 4.9 64.1 1.0 N B:TYR364 5.0 51.2 1.0 CB B:PHE335 5.0 53.9 1.0

L.Briganti, A.S.Godoy, I.Polikarpov. Cryo-Em Structure of An Enterobacter GH43 Beta-Xylosidase: ECXYL43 To Be Published.