Calcium in PDB 8v14: Structure of Nrap-1 and Its Role in Nmdar Signaling

The structure of Structure of Nrap-1 and Its Role in Nmdar Signaling, PDB code: 8v14 was solved by F.G.Whitby, D.J.Goodell, A.V.Maricq, C.P.Hill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.12 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	41.358, 75.921, 152.381, 90, 90, 90
R / Rfree (%)	19.4 / 22.9

The binding sites of Calcium atom in the Structure of Nrap-1 and Its Role in Nmdar Signaling (pdb code 8v14). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Nrap-1 and Its Role in Nmdar Signaling, PDB code: 8v14:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Nrap-1 and Its Role in Nmdar Signaling


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Nrap-1 and Its Role in Nmdar Signaling within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:50.1 occ:1.00 OD1 A:ASP40 2.0 50.9 1.0 OD2 A:ASP50 2.2 55.1 1.0 O A:TYR37 2.2 46.3 1.0 O A:SER42 2.3 59.7 1.0 OE2 A:GLU51 2.3 53.7 1.0 OD2 A:ASP44 2.4 55.9 1.0 CG A:ASP40 3.0 52.4 1.0 CG A:ASP50 3.4 55.0 1.0 CD A:GLU51 3.4 53.3 1.0 C A:TYR37 3.4 46.6 1.0 C A:SER42 3.5 63.3 1.0 CG A:ASP44 3.5 61.3 1.0 OD2 A:ASP40 3.6 49.6 1.0 CG A:GLU51 4.0 54.9 1.0 N A:ASP40 4.0 51.6 1.0 N A:ASP44 4.0 66.6 1.0 CB A:ASP50 4.1 49.8 1.0 CA A:TYR37 4.1 46.9 1.0 N A:SER42 4.2 65.4 1.0 CB A:ASP40 4.2 51.3 1.0 CB A:ASP44 4.3 62.6 1.0 CB A:TYR37 4.3 48.8 1.0 OD1 A:ASP50 4.3 60.1 1.0 N A:CYS39 4.4 48.7 1.0 OE1 A:GLU51 4.4 54.9 1.0 N A:PRO43 4.4 68.3 1.0 CA A:PRO43 4.4 69.2 1.0 N A:LEU38 4.4 46.3 1.0 CA A:SER42 4.4 66.3 1.0 OD1 A:ASP44 4.5 60.8 1.0 CA A:ASP40 4.5 52.9 1.0 C A:PRO43 4.6 69.1 1.0 C A:LEU38 4.7 48.8 1.0 CA A:LEU38 4.7 48.1 1.0 OG A:SER42 4.7 67.4 1.0 O A:ASP50 4.7 45.4 1.0 C A:ASP50 4.8 45.4 1.0 N A:GLY41 4.8 61.0 1.0 CA A:ASP44 4.8 67.5 1.0 C A:ASP40 4.8 57.5 1.0

Calcium binding site 2 out of 2 in the Structure of Nrap-1 and Its Role in Nmdar Signaling


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Nrap-1 and Its Role in Nmdar Signaling within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:48.5 occ:1.00 OD2 B:ASP50 2.1 49.8 1.0 OD1 B:ASP40 2.1 49.5 1.0 O B:TYR37 2.3 46.8 1.0 OE2 B:GLU51 2.4 49.5 1.0 O B:SER42 2.4 66.7 1.0 OD2 B:ASP44 2.4 53.9 1.0 CG B:ASP40 3.1 53.3 1.0 CG B:ASP50 3.3 51.0 1.0 CD B:GLU51 3.4 52.6 1.0 C B:TYR37 3.5 47.1 1.0 CG B:ASP44 3.5 58.4 1.0 C B:SER42 3.6 67.9 1.0 OD2 B:ASP40 3.7 51.9 1.0 CG B:GLU51 4.0 55.2 1.0 CB B:ASP50 4.1 49.0 1.0 N B:ASP44 4.1 64.6 1.0 CB B:ASP44 4.2 60.1 1.0 CA B:TYR37 4.2 47.1 1.0 N B:SER42 4.2 67.0 1.0 CB B:TYR37 4.2 49.5 1.0 N B:ASP40 4.3 52.8 1.0 OD1 B:ASP50 4.3 53.4 1.0 CB B:ASP40 4.3 51.8 1.0 OD1 B:ASP44 4.4 63.1 1.0 OE1 B:GLU51 4.4 51.1 1.0 CA B:SER42 4.5 69.2 1.0 N B:PRO43 4.5 70.8 1.0 CA B:PRO43 4.5 68.6 1.0 N B:LEU38 4.5 45.4 1.0 N B:CYS39 4.5 47.8 1.0 C B:PRO43 4.6 68.6 1.0 CA B:LEU38 4.6 46.4 1.0 C B:LEU38 4.7 46.8 1.0 CA B:ASP40 4.7 54.8 1.0 OG B:SER42 4.8 74.3 1.0 O B:ASP50 4.8 41.9 1.0 CA B:ASP44 4.8 64.5 1.0 N B:GLY41 4.9 61.1 1.0 C B:ASP50 4.9 47.2 1.0 C B:ASP40 4.9 60.2 1.0

D.M.Goodell, A.V.Maricq. Functional and Structural Studies of Nrap-1 and Nmdar Signaling To Be Published.