Calcium in PDB 8vh0: Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera

All present enzymatic activity of Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera:
1.11.1.18;

The structure of Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera also contains other interesting chemical elements:

Vanadium

(V)

2 atoms

The binding sites of Calcium atom in the Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera (pdb code 8vh0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera, PDB code: 8vh0:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:1.5 occ:1.00 OD2 A:ASP368 2.3 10.7 1.0 O A:GLN370 2.4 16.8 1.0 O A:PHE361 2.4 17.5 1.0 OD1 A:ASP365 2.5 12.8 1.0 O A:GLN363 2.6 18.6 1.0 OD1 A:ASP368 2.7 26.5 1.0 CG A:ASP368 2.9 8.2 1.0 C A:PHE361 3.4 4.2 1.0 C A:GLN370 3.4 0.6 1.0 C A:GLN363 3.6 12.2 1.0 CG A:ASP365 3.7 10.8 1.0 N A:ASP365 4.1 15.7 1.0 N A:GLN363 4.1 9.7 1.0 C A:GLU364 4.1 10.1 1.0 N A:ASP371 4.1 6.5 1.0 CA A:ASP371 4.1 5.8 1.0 CA A:PHE361 4.2 7.8 1.0 C A:GLN362 4.2 7.4 1.0 CA A:ASP365 4.2 13.1 1.0 CB A:PHE361 4.3 6.5 1.0 N A:GLN362 4.3 11.9 1.0 CB A:ASP368 4.3 4.7 1.0 O A:GLU364 4.3 14.2 1.0 N A:GLN370 4.4 1.6 1.0 CA A:GLN363 4.4 10.9 1.0 CA A:GLN362 4.5 6.7 1.0 CA A:GLN370 4.5 7.2 1.0 OD2 A:ASP365 4.6 15.1 1.0 N A:GLU364 4.6 16.5 1.0 CA A:GLU364 4.6 16.0 1.0 CB A:ASP365 4.6 9.7 1.0 OD1 A:ASP371 4.7 23.7 1.0 O A:GLN362 4.7 15.4 1.0 C A:ASP371 5.0 8.7 1.0

Calcium binding site 2 out of 2 in the Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca601 b:2.5 occ:1.00 OD2 B:ASP368 2.2 9.3 1.0 O B:GLN363 2.4 20.0 1.0 O B:GLN370 2.6 18.9 1.0 OD1 B:ASP365 2.6 8.6 1.0 O B:PHE361 2.6 21.0 1.0 OD1 B:ASP368 2.7 24.2 1.0 CG B:ASP368 2.8 6.1 1.0 C B:GLN363 3.5 14.5 1.0 C B:PHE361 3.5 9.5 1.0 C B:GLN370 3.6 1.4 1.0 CG B:ASP365 3.7 15.6 1.0 N B:ASP365 3.9 14.9 1.0 C B:GLU364 3.9 11.2 1.0 CA B:ASP365 4.0 12.4 1.0 N B:GLN363 4.1 9.0 1.0 O B:GLU364 4.2 11.4 1.0 CA B:PHE361 4.2 8.9 1.0 N B:ASP371 4.3 8.8 1.0 CB B:ASP368 4.3 4.5 1.0 CA B:ASP371 4.3 7.0 1.0 C B:GLN362 4.3 9.1 1.0 CA B:GLN363 4.4 10.2 1.0 CB B:PHE361 4.4 6.8 1.0 N B:GLN370 4.4 8.1 1.0 N B:GLU364 4.4 17.6 1.0 N B:GLN362 4.5 9.6 1.0 CA B:GLU364 4.5 17.4 1.0 CB B:ASP365 4.5 10.4 1.0 CA B:GLN370 4.6 5.0 1.0 OD2 B:ASP365 4.6 21.3 1.0 CA B:GLN362 4.6 9.7 1.0 O B:GLN362 4.8 14.3 1.0 OD1 B:ASP371 4.9 25.0 1.0 CB B:GLN363 5.0 13.6 1.0

L.Z.Hessefort, D.Williams, K.F.Biegasiewicz. High-Resolution Cryoem Unveils Insights Into the Catalytic Mechanism of A Vanadium-Dependent Bromoperoxidase To Be Published.