Calcium in PDB 8vrf: Sucrose-Phosphate Synthase-Like Protein From Leishmania Major

All present enzymatic activity of Sucrose-Phosphate Synthase-Like Protein From Leishmania Major:
2.4.1.14;

The structure of Sucrose-Phosphate Synthase-Like Protein From Leishmania Major, PDB code: 8vrf was solved by M.A.Gorman, M.W.Parker, M.J.Mcconville, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.08 / 1.74
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	130.057, 92.709, 100.55, 90, 120.44, 90
R / Rfree (%)	17.9 / 21.1

The binding sites of Calcium atom in the Sucrose-Phosphate Synthase-Like Protein From Leishmania Major (pdb code 8vrf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Sucrose-Phosphate Synthase-Like Protein From Leishmania Major, PDB code: 8vrf:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Sucrose-Phosphate Synthase-Like Protein From Leishmania Major


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Sucrose-Phosphate Synthase-Like Protein From Leishmania Major within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca501 b:26.4 occ:1.00 N B:GLY157 3.2 22.9 1.0 N B:HIS156 3.4 22.7 1.0 N B:CYS127 3.5 19.4 1.0 N B:ALA159 3.5 22.1 1.0 CB B:ALA159 3.6 21.6 1.0 CA B:HIS126 3.7 16.7 1.0 N B:THR158 3.8 22.7 1.0 CA B:GLY157 3.8 24.8 1.0 SG B:CYS127 3.9 22.6 1.0 C B:GLY157 3.9 23.9 1.0 N B:LEU160 3.9 21.5 1.0 CD2 B:HIS126 3.9 18.6 1.0 CA B:ALA155 3.9 20.7 1.0 CB B:HIS126 3.9 16.1 1.0 CA B:ALA159 4.0 20.5 1.0 CG B:LEU160 4.0 23.7 1.0 C B:ALA155 4.0 24.5 1.0 C B:HIS126 4.1 17.3 1.0 CB B:CYS127 4.1 19.1 1.0 C B:HIS156 4.2 23.9 1.0 CG B:HIS126 4.2 16.4 1.0 CA B:HIS156 4.3 20.9 1.0 CA B:CYS127 4.4 18.6 1.0 CB B:ALA155 4.5 20.7 1.0 C B:ALA159 4.5 23.4 1.0 C B:THR158 4.5 22.4 1.0 O B:GLY157 4.6 24.8 1.0 CD2 B:LEU160 4.7 24.4 1.0 CB B:HIS156 4.7 20.3 1.0 O B:PHE154 4.7 19.2 1.0 CA B:THR158 4.7 22.7 1.0 CB B:LEU160 4.8 24.0 1.0 CD1 B:LEU160 4.8 22.6 1.0 OG1 B:THR158 4.8 28.2 1.0 N B:HIS126 4.9 16.1 1.0 CA B:LEU160 4.9 24.2 1.0

Calcium binding site 2 out of 3 in the Sucrose-Phosphate Synthase-Like Protein From Leishmania Major


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Sucrose-Phosphate Synthase-Like Protein From Leishmania Major within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca502 b:26.1 occ:0.95 O B:HOH700 3.2 22.8 1.0 N B:ARG118 3.3 19.5 1.0 CA B:LYS117 3.8 19.1 1.0 CG B:LYS117 4.0 22.6 1.0 C B:LYS117 4.0 19.8 1.0 CB B:ARG118 4.2 19.9 1.0 CG B:ARG118 4.2 21.3 1.0 CA B:ARG118 4.3 19.1 1.0 CB B:LYS117 4.3 21.3 1.0 O B:ARG118 4.7 19.8 1.0 O B:GLY116 4.9 22.6 1.0 N B:LYS117 4.9 18.1 1.0 NZ B:LYS117 5.0 28.0 1.0

Calcium binding site 3 out of 3 in the Sucrose-Phosphate Synthase-Like Protein From Leishmania Major


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Sucrose-Phosphate Synthase-Like Protein From Leishmania Major within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:24.7 occ:1.00 N A:GLY157 3.2 25.0 1.0 N A:CYS127 3.5 18.6 1.0 N A:ALA159 3.5 22.8 1.0 N A:HIS156 3.5 19.6 1.0 CB A:ALA159 3.6 24.9 1.0 CA A:HIS126 3.8 18.3 1.0 CD2 A:HIS126 3.9 20.5 1.0 CA A:GLY157 3.9 25.1 1.0 C A:GLY157 3.9 26.5 1.0 N A:THR158 3.9 24.8 1.0 SG A:CYS127 3.9 21.8 1.0 CG A:LEU160 4.0 23.4 1.0 CB A:HIS126 4.0 18.0 1.0 N A:LEU160 4.0 21.7 1.0 CA A:ALA155 4.0 20.4 1.0 CA A:ALA159 4.0 22.8 1.0 CB A:CYS127 4.1 20.2 1.0 C A:HIS126 4.1 17.1 1.0 C A:ALA155 4.2 22.5 1.0 C A:HIS156 4.2 22.3 1.0 CG A:HIS126 4.2 19.7 1.0 CA A:HIS156 4.3 19.9 1.0 CA A:CYS127 4.4 19.4 1.0 CD2 A:LEU160 4.4 24.7 1.0 C A:ALA159 4.5 19.7 1.0 CB A:ALA155 4.5 22.2 1.0 C A:THR158 4.5 22.1 1.0 O A:GLY157 4.6 30.3 1.0 CB A:HIS156 4.6 19.9 1.0 O A:PHE154 4.7 20.4 1.0 CD1 A:LEU160 4.7 24.2 1.0 CB A:LEU160 4.8 21.3 1.0 OG1 A:THR158 4.8 26.8 1.0 CA A:THR158 4.8 24.5 1.0 N A:HIS126 5.0 15.9 1.0 CA A:LEU160 5.0 22.7 1.0

M.A.Gorman, M.W.Parker, M.J.Mcconville. Sucrose-Phosphate Synthase-Like Protein From Leishmania Major To Be Published.