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Calcium in PDB 8vwy: Complex Structure of Mouse C1QL3 with BAI3

Calcium Binding Sites:

The binding sites of Calcium atom in the Complex Structure of Mouse C1QL3 with BAI3 (pdb code 8vwy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Complex Structure of Mouse C1QL3 with BAI3, PDB code: 8vwy:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in 8vwy

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Calcium binding site 1 out of 7 in the Complex Structure of Mouse C1QL3 with BAI3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Complex Structure of Mouse C1QL3 with BAI3 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca201

b:57.4
occ:1.00
 OD2 E:ASP93 2.3 67.7 1.0
OD2 H:ASP93 2.3 58.5 1.0
OD2 I:ASP93 2.3 55.3 1.0
OD2 I:ASP87 2.8 58.4 1.0
OD2 E:ASP87 2.8 66.3 1.0
OD2 H:ASP87 2.9 62.2 1.0
CG E:ASP93 3.5 58.9 1.0
CG H:ASP93 3.5 59.4 1.0
CG I:ASP93 3.5 53.6 1.0
CG I:ASP87 3.9 61.5 1.0
CG E:ASP87 4.0 66.9 1.0
CG H:ASP87 4.1 67.0 1.0
O I:GLN86 4.2 51.5 1.0
OD1 E:ASP93 4.3 56.1 1.0
OD1 H:ASP93 4.3 56.4 1.0
O H:GLN86 4.3 60.3 1.0
OD1 I:ASP93 4.3 52.6 1.0
O E:GLN86 4.4 63.8 1.0
CB E:ASP93 4.5 51.2 1.0
CB H:ASP93 4.5 49.1 1.0
CB I:ASP93 4.5 45.3 1.0
CA E:CA203 4.7 66.6 1.0
CB I:ASP87 4.7 53.5 1.0
OD1 I:ASP87 4.8 63.0 1.0
OD1 E:ASP87 4.8 67.7 1.0
CB E:ASP87 4.9 60.1 1.0
CB H:ASP87 4.9 61.0 1.0
OD1 H:ASP87 4.9 66.9 1.0

Calcium binding site 2 out of 7 in 8vwy

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Calcium binding site 2 out of 7 in the Complex Structure of Mouse C1QL3 with BAI3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Complex Structure of Mouse C1QL3 with BAI3 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca202

b:80.1
occ:1.00
 OD1 I:ASP89 2.9 89.7 1.0
OD1 H:ASP89 3.0 82.0 1.0
OD1 E:ASP89 3.1 92.5 1.0
OD2 E:ASP89 3.1 78.8 1.0
OD2 H:ASP89 3.1 82.2 1.0
OD2 I:ASP89 3.2 81.2 1.0
CG I:ASP89 3.4 81.3 1.0
CG H:ASP89 3.5 79.7 1.0
CG E:ASP89 3.5 84.1 1.0
CB I:ASP89 4.9 66.9 1.0
CB H:ASP89 5.0 68.9 1.0
CB E:ASP89 5.0 72.0 1.0

Calcium binding site 3 out of 7 in 8vwy

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Calcium binding site 3 out of 7 in the Complex Structure of Mouse C1QL3 with BAI3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Complex Structure of Mouse C1QL3 with BAI3 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca203

b:66.6
occ:1.00
 OD1 E:ASP87 2.7 67.7 1.0
OD1 I:ASP87 3.0 63.0 1.0
OD1 H:ASP87 3.1 66.9 1.0
CG E:ASP87 3.4 66.9 1.0
OD2 E:ASP87 3.5 66.3 1.0
OD2 I:ASP89 3.5 81.2 1.0
OD2 E:ASP89 3.5 78.8 1.0
CG I:ASP87 3.5 61.5 1.0
OD2 I:ASP87 3.6 58.4 1.0
OD2 H:ASP89 3.6 82.2 1.0
OD2 H:ASP87 3.7 62.2 1.0
CG H:ASP87 3.7 67.0 1.0
OD1 E:ASN91 4.3 72.9 1.0
CG E:ASP89 4.4 84.1 1.0
CG I:ASP89 4.5 81.3 1.0
CG H:ASP89 4.6 79.7 1.0
CB E:ASP89 4.6 72.0 1.0
OD1 H:ASN91 4.6 69.6 1.0
CA E:CA201 4.7 57.4 1.0
CB E:ASP87 4.7 60.1 1.0
N I:ALA88 4.7 58.2 1.0
CB I:ASP87 4.8 53.5 1.0
OD1 I:ASN91 4.8 70.1 1.0
CB I:ASP89 4.8 66.9 1.0
N E:ASP89 4.8 72.0 1.0
N E:ALA88 4.8 65.3 1.0
CA I:ASP87 4.8 51.8 1.0
N I:ASP89 4.8 68.1 1.0
CA E:ASP87 4.9 56.6 1.0
CB H:ASP89 4.9 68.9 1.0
CB H:ASP87 5.0 61.0 1.0

Calcium binding site 4 out of 7 in 8vwy

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Calcium binding site 4 out of 7 in the Complex Structure of Mouse C1QL3 with BAI3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Complex Structure of Mouse C1QL3 with BAI3 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca201

b:42.3
occ:1.00
 OD1 H:ASP93 2.5 56.4 1.0
OD1 I:ASP93 2.5 52.6 1.0
OD1 E:ASP93 2.5 56.1 1.0
CG H:ASP93 3.5 59.4 1.0
CG I:ASP93 3.5 53.6 1.0
CG E:ASP93 3.5 58.9 1.0
OD2 I:ASP93 3.8 55.3 1.0
OD2 H:ASP93 3.8 58.5 1.0
OD2 E:ASP93 3.8 67.7 1.0
N H:TYR94 4.5 38.4 1.0
N E:TYR94 4.5 42.7 1.0
N I:TYR94 4.6 38.1 1.0
O H:TYR94 4.6 43.1 1.0
O E:TYR94 4.6 45.7 1.0
O I:TYR94 4.6 46.5 1.0
CB H:ASP93 4.8 49.1 1.0
CB E:ASP93 4.8 51.2 1.0
CB I:ASP93 4.8 45.3 1.0

Calcium binding site 5 out of 7 in 8vwy

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Calcium binding site 5 out of 7 in the Complex Structure of Mouse C1QL3 with BAI3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Complex Structure of Mouse C1QL3 with BAI3 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Ca201

b:34.6
occ:1.00
 OD2 I:ASP72 2.3 51.1 1.0
NZ A:LYS40 2.9 13.3 1.0
CG I:ASP72 3.5 47.2 1.0
OD2 I:ASP114 3.7 54.6 1.0
OD2 A:ASP37 4.0 28.8 1.0
CG I:ASP114 4.0 56.8 1.0
OD1 I:ASP72 4.0 42.5 1.0
CE A:LYS40 4.1 17.4 1.0
OG I:SER82 4.1 41.2 1.0
OH E:TYR126 4.3 57.6 1.0
CB I:ASP114 4.4 47.0 1.0
OD1 I:ASP114 4.6 62.1 1.0
CG2 I:VAL79 4.7 55.2 1.0
CB I:ASP72 4.7 42.7 1.0
CG1 I:VAL79 4.7 44.4 1.0
CB I:SER82 4.7 35.7 1.0
OD1 E:ASN124 4.8 62.6 1.0
CG A:ASP37 4.9 22.7 1.0

Calcium binding site 6 out of 7 in 8vwy

Go back to Calcium Binding Sites List in 8vwy
Calcium binding site 6 out of 7 in the Complex Structure of Mouse C1QL3 with BAI3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Complex Structure of Mouse C1QL3 with BAI3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca301

b:53.4
occ:1.00
 OD2 H:ASP72 2.3 52.4 1.0
NZ B:LYS40 3.0 12.6 1.0
CG H:ASP72 3.5 46.1 1.0
OD2 H:ASP114 3.8 54.4 1.0
OD2 B:ASP37 3.9 26.7 1.0
OD1 H:ASP72 4.0 43.2 1.0
OG H:SER82 4.1 40.7 1.0
CG H:ASP114 4.1 55.8 1.0
CE B:LYS40 4.1 18.6 1.0
OH I:TYR126 4.3 49.4 1.0
CB H:ASP114 4.4 45.1 1.0
CG1 H:VAL79 4.6 41.8 1.0
OD1 H:ASP114 4.7 61.5 1.0
CG2 H:VAL79 4.7 54.5 1.0
CB H:ASP72 4.7 41.8 1.0
OD1 I:ASN124 4.7 56.3 1.0
CB H:SER82 4.8 33.1 1.0
CG B:ASP37 4.8 22.3 1.0

Calcium binding site 7 out of 7 in 8vwy

Go back to Calcium Binding Sites List in 8vwy
Calcium binding site 7 out of 7 in the Complex Structure of Mouse C1QL3 with BAI3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Complex Structure of Mouse C1QL3 with BAI3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca301

b:62.7
occ:1.00
 OD2 E:ASP72 2.3 58.5 1.0
NZ C:LYS40 2.9 8.9 1.0
CG E:ASP72 3.5 52.0 1.0
OD2 E:ASP114 3.9 59.3 1.0
OD2 C:ASP37 3.9 25.1 1.0
OD1 E:ASP72 4.0 49.1 1.0
OG E:SER82 4.1 47.0 1.0
CG E:ASP114 4.1 60.0 1.0
CE C:LYS40 4.1 14.5 1.0
OH H:TYR126 4.2 56.7 1.0
CB E:ASP114 4.5 50.7 1.0
OD1 E:ASP114 4.5 65.6 1.0
CG1 E:VAL79 4.6 47.0 1.0
CB E:ASP72 4.7 48.0 1.0
CG2 E:VAL79 4.7 62.8 1.0
CB E:SER82 4.7 41.7 1.0
OD1 H:ASN124 4.8 49.5 1.0
CG C:ASP37 4.9 19.4 1.0

Reference:

Y.Miao, T.C.Sudhof. Complex Structure of C1QL3 with BAI3 To Be Published.
Page generated: Sun Feb 9 06:17:45 2025

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