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Calcium in PDB 8w5a: Crystal Structure of the Ring Domain of Human Xiap

Enzymatic activity of Crystal Structure of the Ring Domain of Human Xiap

All present enzymatic activity of Crystal Structure of the Ring Domain of Human Xiap:
2.3.2.27;

Protein crystallography data

The structure of Crystal Structure of the Ring Domain of Human Xiap, PDB code: 8w5a was solved by Q.Zhang, H.Sun, X.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.32 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 35.696, 48.742, 39.639, 90, 97.28, 90
R / Rfree (%) 21.7 / 24.8

Other elements in 8w5a:

The structure of Crystal Structure of the Ring Domain of Human Xiap also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Ring Domain of Human Xiap (pdb code 8w5a). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Ring Domain of Human Xiap, PDB code: 8w5a:

Calcium binding site 1 out of 1 in 8w5a

Go back to Calcium Binding Sites List in 8w5a
Calcium binding site 1 out of 1 in the Crystal Structure of the Ring Domain of Human Xiap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Ring Domain of Human Xiap within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:24.4
occ:1.00
O B:HOH601 2.0 25.2 1.0
O B:HOH616 2.1 31.1 1.0
OD1 B:ASP455 2.2 20.2 1.0
O B:HOH622 2.2 26.2 1.0
O B:HOH620 2.3 28.8 1.0
O B:HOH624 2.4 34.1 1.0
CG B:ASP455 3.1 19.9 1.0
OD2 B:ASP455 3.3 22.3 1.0
O B:CYS453 4.2 16.2 1.0
O B:MET454 4.4 16.7 1.0
CB B:ASP455 4.5 15.3 1.0
CA B:ASP455 4.8 14.3 1.0
C B:MET454 4.8 18.6 1.0

Reference:

Q.Zhang, H.Sun. Crystal Structure of the Ring Domain of Human Xiap To Be Published.
Page generated: Thu Jul 10 08:06:20 2025

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