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Calcium in PDB 8w8x: Cryo-Em Structure of Beta-Msh-MC3R-GS_NB35 Complex

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of Beta-Msh-MC3R-GS_NB35 Complex (pdb code 8w8x). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of Beta-Msh-MC3R-GS_NB35 Complex, PDB code: 8w8x:

Calcium binding site 1 out of 1 in 8w8x

Go back to Calcium Binding Sites List in 8w8x
Calcium binding site 1 out of 1 in the Cryo-Em Structure of Beta-Msh-MC3R-GS_NB35 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Beta-Msh-MC3R-GS_NB35 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Ca501

b:74.4
occ:1.00
OD2 R:ASP121 2.2 70.5 1.0
OD1 R:ASP121 2.5 69.4 1.0
CG R:ASP121 2.7 69.8 1.0
OE2 R:GLU94 2.9 76.2 1.0
O L:GLU4 3.6 77.6 1.0
NE L:ARG7 4.0 70.5 1.0
CD R:GLU94 4.0 77.5 1.0
CA L:PHE6 4.1 63.7 1.0
CB R:ASP121 4.2 69.0 1.0
N L:PHE6 4.2 65.3 1.0
C L:GLU4 4.3 77.3 1.0
C L:HIS5 4.3 70.6 1.0
C L:PHE6 4.4 63.7 1.0
O L:HIS5 4.4 71.6 1.0
O R:ASP117 4.4 87.0 1.0
CD L:ARG7 4.5 71.2 1.0
CB R:ASP117 4.5 86.5 1.0
OE1 R:GLU94 4.5 77.2 1.0
OH L:TYR1 4.6 93.0 1.0
N L:ARG7 4.6 67.4 1.0
CG L:GLU4 4.7 78.7 1.0
CG R:ASP117 4.7 87.6 1.0
OD2 R:ASP117 4.7 87.4 1.0
CG L:ARG7 4.8 72.3 1.0
N L:GLU4 4.8 80.8 1.0
N L:HIS5 4.9 71.5 1.0
O L:PHE6 4.9 64.0 1.0
CZ L:ARG7 4.9 71.1 1.0

Reference:

F.Jingpeng, H.Hongli. Structure Basis of Ligand Selectivity and Signal Transduction in Human Melanocortin-3 Receptor To Be Published.
Page generated: Thu Jul 10 08:06:35 2025

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