Calcium in PDB 8x51: Cryo-Em Structure of Gabija Gaja in Complex with Dna(Focused Refinement)

The binding sites of Calcium atom in the Cryo-Em Structure of Gabija Gaja in Complex with Dna(Focused Refinement) (pdb code 8x51). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Gabija Gaja in Complex with Dna(Focused Refinement), PDB code: 8x51:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of Gabija Gaja in Complex with Dna(Focused Refinement)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Gabija Gaja in Complex with Dna(Focused Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca601 b:63.4 occ:1.00 OP1 F:DG11 2.4 51.7 1.0 OD2 B:ASP432 2.5 76.4 1.0 OE2 B:GLU379 2.5 47.4 1.0 CG B:ASP432 3.4 74.8 1.0 O3' F:DC10 3.6 50.5 1.0 P F:DG11 3.6 41.2 1.0 CD B:GLU379 3.6 54.0 1.0 CB B:ASP432 3.6 68.9 1.0 OE1 B:GLU379 4.2 55.5 1.0 OD1 B:ASP432 4.5 74.7 1.0 C5' F:DG11 4.5 21.4 1.0 O5' F:DG11 4.6 11.5 1.0 OP2 F:DG11 4.7 37.2 1.0 CG B:GLU379 4.8 51.9 1.0 OD1 B:ASP434 4.9 68.3 1.0 C3' F:DC10 4.9 33.3 1.0 CB B:ASP511 5.0 79.3 1.0 CA B:ASP432 5.0 62.9 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of Gabija Gaja in Complex with Dna(Focused Refinement)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Gabija Gaja in Complex with Dna(Focused Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca1001 b:50.0 occ:1.00 OP1 E:DC11 2.5 64.0 1.0 OP2 E:DC11 2.8 56.8 1.0 OE1 A:GLU379 2.9 45.6 1.0 P E:DC11 3.1 57.9 1.0 OD2 A:ASP432 3.1 70.1 1.0 CB A:ASP432 3.6 58.7 1.0 CG A:ASP432 3.7 66.1 1.0 CD A:GLU379 3.8 56.6 1.0 O3' E:DC10 3.9 19.4 1.0 OE2 A:GLU379 4.0 60.9 1.0 OD1 A:ASP511 4.0 69.3 1.0 O5' E:DC11 4.5 35.1 1.0 OD1 A:ASP434 4.5 60.5 1.0 C4' E:DC10 4.8 42.8 1.0 OD1 A:ASP432 4.8 64.5 1.0 C3' E:DC10 4.9 45.3 1.0 CG A:ASP511 4.9 78.5 1.0 CA A:ASP432 4.9 47.7 1.0 OD2 A:ASP434 4.9 44.8 1.0 C5' E:DC11 4.9 33.8 1.0

J.Li, Z.Wang, L.Wang. Nucleotide-Sensing Endonuclease with Dsdna To Be Published.