Calcium in PDB 8xmq: Structure of Dimeric CD163 in Complex with Hb-Hp

The structure of Structure of Dimeric CD163 in Complex with Hb-Hp also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Calcium atom in the Structure of Dimeric CD163 in Complex with Hb-Hp (pdb code 8xmq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the Structure of Dimeric CD163 in Complex with Hb-Hp, PDB code: 8xmq:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 12 in the Structure of Dimeric CD163 in Complex with Hb-Hp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Dimeric CD163 in Complex with Hb-Hp within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca1101 b:53.8 occ:1.00 OD2 F:ASP224 2.3 61.8 1.0 OD2 F:ASP186 2.3 52.0 1.0 OD1 F:ASN247 2.3 34.3 1.0 OD1 F:ASP224 3.0 61.3 1.0 CG F:ASP224 3.0 66.3 1.0 CG F:ASN247 3.2 34.6 1.0 ND2 F:ASN247 3.3 44.6 1.0 CG F:ASP186 3.4 48.5 1.0 O 2:LYS94 3.7 63.4 1.0 CB F:ASP186 3.8 52.6 1.0 CB F:ASP224 4.5 65.0 1.0 OD1 F:ASP186 4.5 39.6 1.0 CE 2:LYS94 4.5 59.3 1.0 NZ 2:LYS94 4.6 60.4 1.0 CB F:ASN247 4.6 34.4 1.0 CD 2:LYS94 4.7 57.1 1.0 O F:ASP224 4.7 64.0 1.0 C 2:LYS94 4.8 58.6 1.0 C F:ASP224 4.8 60.9 1.0 N F:ASN247 4.9 36.7 1.0 CB F:ASP225 5.0 72.2 1.0

Calcium binding site 2 out of 12 in the Structure of Dimeric CD163 in Complex with Hb-Hp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Dimeric CD163 in Complex with Hb-Hp within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca1102 b:41.2 occ:1.00 OE1 F:GLU252 2.4 53.8 1.0 OD1 F:ASP186 2.5 39.6 1.0 OD1 F:ASP185 2.6 52.2 1.0 CG F:ASP185 3.2 51.9 1.0 OD2 F:ASP185 3.3 59.0 1.0 CD F:GLU252 3.5 54.0 1.0 CG F:ASP186 3.7 48.5 1.0 CE 2:LYS94 4.0 59.3 1.0 N F:ASP186 4.1 43.0 1.0 C F:ASP185 4.3 50.8 1.0 CA F:ASP186 4.3 48.1 1.0 OE2 F:GLU252 4.3 56.6 1.0 CG F:GLU252 4.3 53.4 1.0 O F:ASP185 4.5 63.4 1.0 CB F:ASP185 4.5 44.2 1.0 CB F:GLU252 4.5 52.4 1.0 OD2 F:ASP186 4.6 52.0 1.0 CB F:ASP186 4.6 52.6 1.0 NZ 2:LYS94 4.6 60.4 1.0 CA F:ASP185 4.8 42.5 1.0 OE1 2:GLU201 4.8 66.5 1.0 N F:ASP185 5.0 38.0 1.0

Calcium binding site 3 out of 12 in the Structure of Dimeric CD163 in Complex with Hb-Hp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Dimeric CD163 in Complex with Hb-Hp within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca1103 b:68.7 occ:1.00 OD1 F:ASP293 2.3 38.2 1.0 OE1 F:GLU359 2.5 46.0 1.0 OD1 F:ASP292 2.6 35.0 1.0 CG F:ASP292 3.3 35.0 1.0 OD2 F:ASP292 3.4 39.8 1.0 CG F:ASP293 3.6 41.9 1.0 CD F:GLU359 3.7 47.0 1.0 OD1 G:ASN80 4.0 58.3 1.0 CG F:GLU359 4.2 44.0 1.0 N F:ASP293 4.2 38.0 1.0 OD2 F:ASP293 4.3 47.9 1.0 CA F:ASP293 4.3 37.1 1.0 CB F:GLU359 4.3 41.8 1.0 C F:ASP292 4.4 43.6 1.0 CB F:ASP293 4.6 36.6 1.0 O F:ASP292 4.6 53.0 1.0 CB F:ASP292 4.7 32.4 1.0 NZ G:LYS82 4.7 51.7 1.0 OE2 F:GLU359 4.7 51.6 1.0 CA G:GLY83 4.7 53.1 1.0 N G:GLY83 4.8 52.4 1.0 CE G:LYS82 4.9 53.9 1.0

Calcium binding site 4 out of 12 in the Structure of Dimeric CD163 in Complex with Hb-Hp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Dimeric CD163 in Complex with Hb-Hp within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca1104 b:54.9 occ:1.00 OE1 F:GLU812 2.4 38.6 1.0 OD1 F:ASP746 2.5 58.0 1.0 OD1 F:ASP745 2.5 52.7 1.0 CD F:GLU812 3.4 47.1 1.0 CG F:ASP745 3.4 46.7 1.0 CG F:ASP746 3.7 61.1 1.0 N F:ASP746 3.7 62.8 1.0 CA F:ASP746 3.8 63.2 1.0 C F:ASP745 3.8 48.4 1.0 OD2 F:ASP745 3.8 44.8 1.0 O F:ASP745 3.9 46.8 1.0 NZ D:LYS1021 4.0 69.7 1.0 OE2 F:GLU812 4.0 44.7 1.0 OE2 D:GLU981 4.0 74.3 1.0 SG F:CYS744 4.3 68.7 1.0 CB F:ASP746 4.3 60.8 1.0 CG F:GLU812 4.4 50.1 1.0 CB F:GLU812 4.5 46.7 1.0 CB F:ASP745 4.5 44.1 1.0 CA F:ASP745 4.6 45.5 1.0 OD2 F:ASP746 4.6 66.1 1.0 N F:ASP745 4.7 46.8 1.0 CD D:GLU981 4.8 76.5 1.0 CE D:LYS1021 5.0 70.1 1.0 CG D:GLU981 5.0 75.2 1.0

Calcium binding site 5 out of 12 in the Structure of Dimeric CD163 in Complex with Hb-Hp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Dimeric CD163 in Complex with Hb-Hp within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca1105 b:81.8 occ:1.00 OD1 F:ASN807 2.3 74.4 1.0 OD2 F:ASP746 2.4 66.1 1.0 OE2 F:GLU785 2.4 92.7 1.0 OD1 F:ASP784 2.4 85.4 1.0 CG F:ASN807 3.1 76.9 1.0 ND2 F:ASN807 3.2 76.5 1.0 CG F:ASP784 3.3 89.3 1.0 CD F:GLU785 3.5 91.0 1.0 CG F:ASP746 3.5 61.1 1.0 OD2 F:ASP784 3.6 88.4 1.0 CG F:GLU785 3.9 88.7 1.0 CB F:ASP746 4.0 60.8 1.0 SG F:CYS808 4.4 82.5 1.0 OD1 F:ASP746 4.5 58.0 1.0 OE1 F:GLU785 4.5 90.6 1.0 CB F:ASN807 4.5 76.3 1.0 CB F:ASP784 4.6 88.8 1.0 CD D:LYS1021 4.7 70.8 1.0 NZ D:LYS1021 4.7 69.7 1.0 N F:ASN807 4.9 80.5 1.0

Calcium binding site 6 out of 12 in the Structure of Dimeric CD163 in Complex with Hb-Hp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Dimeric CD163 in Complex with Hb-Hp within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca1106 b:40.5 occ:1.00 OD1 F:ASP749 2.3 52.2 1.0 O F:MET786 2.5 86.7 1.0 O F:SER747 2.6 67.6 1.0 OD2 F:ASP752 2.6 78.2 1.0 CG F:ASP749 3.0 58.6 1.0 OD2 F:ASP749 3.2 62.5 1.0 CG F:ASP752 3.4 76.4 1.0 OD1 F:ASP752 3.5 75.2 1.0 C F:MET786 3.6 89.2 1.0 C F:SER747 3.8 64.5 1.0 N F:ASP749 3.8 54.8 1.0 CB F:ASP749 4.1 53.5 1.0 CA F:LYS787 4.2 91.6 1.0 N F:LYS787 4.3 92.1 1.0 CA F:TRP748 4.4 47.7 1.0 OG F:SER747 4.5 70.7 1.0 C F:TRP748 4.5 51.1 1.0 N F:TRP748 4.5 49.0 1.0 CA F:ASP749 4.6 53.5 1.0 N F:CYS788 4.6 97.5 1.0 CB F:ASP752 4.6 74.2 1.0 CA F:MET786 4.7 89.4 1.0 CB F:SER747 4.8 66.4 1.0 CB F:MET786 4.8 87.0 1.0 C F:LYS787 4.8 94.9 1.0 O F:CYS788 4.8 88.8 1.0 CA F:SER747 4.9 64.1 1.0 CE F:LYS787 5.0 91.3 1.0 CD F:LYS787 5.0 94.2 1.0

Calcium binding site 7 out of 12 in the Structure of Dimeric CD163 in Complex with Hb-Hp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Dimeric CD163 in Complex with Hb-Hp within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1103 b:31.8 occ:1.00 OE1 D:GLU359 2.2 36.4 1.0 OD1 D:ASP293 2.4 35.6 1.0 OD1 D:ASP292 2.6 37.9 1.0 CD D:GLU359 3.4 38.1 1.0 CG D:ASP292 3.4 35.0 1.0 CG D:ASP293 3.7 38.2 1.0 OD2 D:ASP292 3.7 37.5 1.0 CG D:GLU359 3.9 29.3 1.0 N D:ASP293 4.1 26.8 1.0 CA D:ASP293 4.3 28.3 1.0 C D:ASP292 4.3 29.6 1.0 CB D:GLU359 4.4 16.2 1.0 OE2 D:GLU359 4.4 42.9 1.0 O D:ASP292 4.5 45.9 1.0 OD2 D:ASP293 4.5 47.3 1.0 CB D:ASP293 4.6 25.3 1.0 CB D:ASP292 4.7 30.8 1.0 CA D:ASP292 5.0 21.6 1.0

Calcium binding site 8 out of 12 in the Structure of Dimeric CD163 in Complex with Hb-Hp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Dimeric CD163 in Complex with Hb-Hp within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1104 b:31.9 occ:1.00 OD1 D:ASP224 2.2 24.6 1.0 OD1 D:ASN247 2.4 30.5 1.0 OD2 D:ASP186 2.4 42.7 1.0 CG D:ASP224 3.1 35.0 1.0 CG D:ASN247 3.2 30.8 1.0 OD2 D:ASP224 3.3 37.0 1.0 ND2 D:ASN247 3.4 31.9 1.0 OD1 D:ASP225 3.4 49.3 1.0 CG D:ASP186 3.4 34.7 1.0 OD2 D:ASP225 3.6 53.9 1.0 CB D:ASP186 3.8 34.1 1.0 CG D:ASP225 3.8 48.1 1.0 NZ 2:LYS262 4.1 53.2 1.0 CE 2:LYS262 4.5 52.8 1.0 CB D:ASP224 4.5 40.8 1.0 OD1 D:ASP186 4.6 30.4 1.0 CB D:ASN247 4.7 26.5 1.0 O D:ASN247 4.8 36.6 1.0 N D:ASN247 4.9 29.8 1.0 O D:ASP224 5.0 45.3 1.0

Calcium binding site 9 out of 12 in the Structure of Dimeric CD163 in Complex with Hb-Hp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of Dimeric CD163 in Complex with Hb-Hp within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1105 b:24.2 occ:1.00 OD1 D:ASP185 2.3 35.3 1.0 OE1 D:GLU252 2.3 38.3 1.0 OD1 D:ASP186 2.4 30.4 1.0 CG D:ASP185 2.8 27.7 1.0 OD2 D:ASP185 2.9 31.3 1.0 CD D:GLU252 3.5 37.5 1.0 CG D:ASP186 3.7 34.7 1.0 CG D:GLU252 4.1 20.8 1.0 N D:ASP186 4.1 26.1 1.0 CB D:ASP185 4.1 16.7 1.0 C D:ASP185 4.2 31.1 1.0 CA D:ASP186 4.3 29.8 1.0 O D:ASP185 4.4 35.5 1.0 OD2 D:ASP186 4.5 42.7 1.0 NZ 2:LYS262 4.5 53.2 1.0 CB D:GLU252 4.5 17.7 1.0 OE2 D:GLU252 4.5 44.3 1.0 CA D:ASP185 4.6 21.2 1.0 CB D:ASP186 4.6 34.1 1.0 CE 2:LYS262 4.7 52.8 1.0 N D:ASP185 4.9 25.0 1.0

Calcium binding site 10 out of 12 in the Structure of Dimeric CD163 in Complex with Hb-Hp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of Dimeric CD163 in Complex with Hb-Hp within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1106 b:62.5 occ:1.00 OD1 D:ASP956 2.3 67.7 1.0 OD1 D:ASP955 2.3 66.8 1.0 OE1 D:GLU1022 2.3 69.1 1.0 NZ F:LYS811 3.2 48.2 1.0 CG D:ASP955 3.3 67.8 1.0 CD D:GLU1022 3.5 70.2 1.0 CG D:ASP956 3.5 69.6 1.0 OD2 D:ASP955 3.7 71.1 1.0 N D:ASP956 3.9 66.0 1.0 CB D:GLU1022 4.1 67.2 1.0 CA D:ASP956 4.1 69.2 1.0 SG D:CYS954 4.1 71.9 1.0 CG D:GLU1022 4.1 68.2 1.0 C D:ASP955 4.2 61.6 1.0 OD2 D:ASP956 4.3 69.2 1.0 CB D:ASP956 4.4 70.7 1.0 OE2 D:GLU1022 4.4 70.1 1.0 CE F:LYS811 4.5 46.1 1.0 CB D:ASP955 4.6 64.3 1.0 O D:ASP955 4.6 63.9 1.0 CA D:ASP955 4.7 63.2 1.0 SG D:CYS1018 4.7 90.9 1.0 N D:ASP955 4.7 66.5 1.0

H.Xu, X.D.Su. Structure of Dimeric CD163 in Complex with Hb-Hp To Be Published.