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Calcium in PDB 8xo3: Crystal Structure of Measles Virus Fusion Inhibitor M1 Complexed with F Protein HR1 (HR1-47) (P321 Space Group)

Protein crystallography data

The structure of Crystal Structure of Measles Virus Fusion Inhibitor M1 Complexed with F Protein HR1 (HR1-47) (P321 Space Group), PDB code: 8xo3 was solved by S.Oishi, A.Takahara, T.Nakatsu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.53 / 1.10
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 32.899, 32.899, 124.596, 90, 90, 120
R / Rfree (%) 21.3 / 23.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Measles Virus Fusion Inhibitor M1 Complexed with F Protein HR1 (HR1-47) (P321 Space Group) (pdb code 8xo3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Measles Virus Fusion Inhibitor M1 Complexed with F Protein HR1 (HR1-47) (P321 Space Group), PDB code: 8xo3:

Calcium binding site 1 out of 1 in 8xo3

Go back to Calcium Binding Sites List in 8xo3
Calcium binding site 1 out of 1 in the Crystal Structure of Measles Virus Fusion Inhibitor M1 Complexed with F Protein HR1 (HR1-47) (P321 Space Group)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Measles Virus Fusion Inhibitor M1 Complexed with F Protein HR1 (HR1-47) (P321 Space Group) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:26.3
occ:0.50
O B:HOH614 2.0 48.0 1.0
O B:HOH602 2.2 50.1 1.0
OD1 B:ASP472 2.3 27.1 1.0
O B:HOH608 2.3 33.2 1.0
O B:HOH617 2.4 30.6 1.0
CG B:ASP472 3.5 25.1 1.0
OD2 B:ASP472 4.1 28.3 1.0
OE1 B:GLU475 4.1 39.3 1.0
OE2 B:GLU475 4.3 45.4 1.0
O B:HOH618 4.6 38.1 1.0
CD B:GLU475 4.6 36.0 1.0
CB B:ASP472 4.7 19.7 1.0
O B:HOH653 4.7 37.6 1.0
CA B:ASP472 4.8 18.7 1.0
O B:ALA468 4.8 20.4 1.0
N B:ASP472 4.9 18.5 1.0

Reference:

A.Takahara, T.Nakatsu, K.Hirata, H.Hayashi, K.Kawaji, S.Inuki, H.Ohno, H.Kato, E.Kodama, S.Oishi. Structure-Based Design of Measles Virus Fusion Inhibitors To Be Published.
Page generated: Sat Feb 8 16:11:42 2025

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