Calcium in PDB 8yrm: Iota Toxin Ib Pore Serine-Clamp Mutant
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Calcium atom in the Iota Toxin Ib Pore Serine-Clamp Mutant
(pdb code 8yrm). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the
Iota Toxin Ib Pore Serine-Clamp Mutant, PDB code: 8yrm:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 14 in 8yrm
Go back to
Calcium Binding Sites List in 8yrm
Calcium binding site 1 out
of 14 in the Iota Toxin Ib Pore Serine-Clamp Mutant
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Iota Toxin Ib Pore Serine-Clamp Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca801
b:37.7
occ:1.00
|
O
|
A:GLU262
|
2.2
|
40.7
|
1.0
|
OD2
|
A:ASP221
|
2.3
|
51.8
|
1.0
|
O
|
A:SER259
|
2.3
|
42.5
|
1.0
|
OD2
|
A:ASP272
|
2.4
|
41.4
|
1.0
|
OE1
|
A:GLU230
|
2.5
|
41.2
|
1.0
|
OD2
|
A:ASP223
|
2.6
|
47.9
|
1.0
|
OE2
|
A:GLU230
|
2.8
|
44.3
|
1.0
|
CD
|
A:GLU230
|
3.0
|
41.9
|
1.0
|
C
|
A:GLU262
|
3.4
|
39.7
|
1.0
|
CG
|
A:ASP221
|
3.4
|
48.8
|
1.0
|
CG
|
A:ASP223
|
3.5
|
48.0
|
1.0
|
CG
|
A:ASP272
|
3.5
|
38.2
|
1.0
|
C
|
A:SER259
|
3.5
|
45.0
|
1.0
|
OD1
|
A:ASP223
|
3.9
|
49.2
|
1.0
|
CA
|
A:SER263
|
4.0
|
38.3
|
1.0
|
OD1
|
A:ASP221
|
4.0
|
60.0
|
1.0
|
N
|
A:SER263
|
4.1
|
38.1
|
1.0
|
CB
|
A:ASP272
|
4.1
|
37.3
|
1.0
|
CA
|
A:CA802
|
4.1
|
48.1
|
1.0
|
OG1
|
A:THR265
|
4.2
|
39.4
|
1.0
|
CA
|
A:TYR260
|
4.2
|
47.3
|
1.0
|
N
|
A:GLU262
|
4.3
|
44.3
|
1.0
|
N
|
A:TYR260
|
4.3
|
44.0
|
1.0
|
CA
|
A:GLU262
|
4.4
|
41.9
|
1.0
|
O
|
A:SER263
|
4.4
|
43.2
|
1.0
|
C
|
A:SER263
|
4.4
|
37.8
|
1.0
|
OD1
|
A:ASP272
|
4.4
|
42.0
|
1.0
|
N
|
A:SER259
|
4.5
|
40.1
|
1.0
|
CG
|
A:GLU230
|
4.5
|
41.2
|
1.0
|
CA
|
A:SER259
|
4.5
|
43.9
|
1.0
|
C
|
A:TYR260
|
4.5
|
44.0
|
1.0
|
OG
|
A:SER258
|
4.5
|
45.7
|
1.0
|
CB
|
A:ASP223
|
4.6
|
49.0
|
1.0
|
CB
|
A:ASP221
|
4.6
|
49.4
|
1.0
|
CB
|
A:SER258
|
4.6
|
42.2
|
1.0
|
O
|
A:TYR260
|
4.9
|
49.4
|
1.0
|
N
|
A:LEU261
|
4.9
|
40.5
|
1.0
|
C
|
A:SER258
|
5.0
|
39.1
|
1.0
|
|
Calcium binding site 2 out
of 14 in 8yrm
Go back to
Calcium Binding Sites List in 8yrm
Calcium binding site 2 out
of 14 in the Iota Toxin Ib Pore Serine-Clamp Mutant
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Iota Toxin Ib Pore Serine-Clamp Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca802
b:48.1
occ:1.00
|
OD1
|
A:ASP221
|
2.1
|
60.0
|
1.0
|
OD1
|
A:ASP223
|
2.1
|
49.2
|
1.0
|
OE2
|
A:GLU230
|
2.3
|
44.3
|
1.0
|
OD1
|
A:ASP219
|
2.3
|
60.0
|
1.0
|
O
|
A:ILE225
|
2.3
|
45.8
|
1.0
|
CG
|
A:ASP221
|
3.0
|
48.8
|
1.0
|
CG
|
A:ASP223
|
3.2
|
48.0
|
1.0
|
OD2
|
A:ASP221
|
3.3
|
51.8
|
1.0
|
CD
|
A:GLU230
|
3.4
|
41.9
|
1.0
|
CG
|
A:ASP219
|
3.5
|
56.0
|
1.0
|
C
|
A:ILE225
|
3.5
|
49.1
|
1.0
|
OD2
|
A:ASP223
|
3.7
|
47.9
|
1.0
|
OD1
|
A:ASP227
|
4.0
|
66.3
|
1.0
|
N
|
A:ILE225
|
4.1
|
48.8
|
1.0
|
CA
|
A:CA801
|
4.1
|
37.7
|
1.0
|
CG
|
A:GLU230
|
4.1
|
41.2
|
1.0
|
CA
|
A:ILE225
|
4.2
|
47.5
|
1.0
|
OD2
|
A:ASP219
|
4.2
|
62.0
|
1.0
|
N
|
A:ASP223
|
4.2
|
49.9
|
1.0
|
CB
|
A:ILE225
|
4.3
|
49.1
|
1.0
|
CA
|
A:ASP219
|
4.4
|
54.7
|
1.0
|
O
|
A:TYR260
|
4.4
|
49.4
|
1.0
|
N
|
A:ASP221
|
4.4
|
46.1
|
1.0
|
CB
|
A:ASP223
|
4.4
|
49.0
|
1.0
|
OE1
|
A:GLU230
|
4.4
|
41.2
|
1.0
|
CB
|
A:ASP221
|
4.4
|
49.4
|
1.0
|
CB
|
A:ASP219
|
4.5
|
56.5
|
1.0
|
C
|
A:PRO226
|
4.5
|
52.9
|
1.0
|
N
|
A:PRO226
|
4.6
|
53.3
|
1.0
|
N
|
A:ASN222
|
4.6
|
52.7
|
1.0
|
CA
|
A:TYR260
|
4.6
|
47.3
|
1.0
|
O
|
A:PRO226
|
4.7
|
56.8
|
1.0
|
C
|
A:ASP219
|
4.7
|
56.0
|
1.0
|
N
|
A:THR220
|
4.7
|
51.4
|
1.0
|
CA
|
A:ASP223
|
4.7
|
49.5
|
1.0
|
N
|
A:ASP227
|
4.7
|
53.8
|
1.0
|
CA
|
A:PRO226
|
4.8
|
51.9
|
1.0
|
CA
|
A:ASP221
|
4.8
|
47.7
|
1.0
|
C
|
A:ASP223
|
4.9
|
49.6
|
1.0
|
C
|
A:TYR260
|
4.9
|
44.0
|
1.0
|
C
|
A:ASP221
|
4.9
|
49.3
|
1.0
|
N
|
A:ASN224
|
5.0
|
49.0
|
1.0
|
|
Calcium binding site 3 out
of 14 in 8yrm
Go back to
Calcium Binding Sites List in 8yrm
Calcium binding site 3 out
of 14 in the Iota Toxin Ib Pore Serine-Clamp Mutant
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Iota Toxin Ib Pore Serine-Clamp Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca801
b:37.5
occ:1.00
|
O
|
B:GLU262
|
2.2
|
40.5
|
1.0
|
OD2
|
B:ASP221
|
2.3
|
52.0
|
1.0
|
O
|
B:SER259
|
2.3
|
42.2
|
1.0
|
OD2
|
B:ASP272
|
2.4
|
41.5
|
1.0
|
OE1
|
B:GLU230
|
2.5
|
41.5
|
1.0
|
OD2
|
B:ASP223
|
2.6
|
48.4
|
1.0
|
OE2
|
B:GLU230
|
2.8
|
43.9
|
1.0
|
CD
|
B:GLU230
|
3.0
|
41.9
|
1.0
|
C
|
B:GLU262
|
3.4
|
39.6
|
1.0
|
CG
|
B:ASP221
|
3.4
|
48.6
|
1.0
|
CG
|
B:ASP223
|
3.5
|
47.7
|
1.0
|
CG
|
B:ASP272
|
3.5
|
38.0
|
1.0
|
C
|
B:SER259
|
3.5
|
45.2
|
1.0
|
OD1
|
B:ASP223
|
3.9
|
49.1
|
1.0
|
CA
|
B:SER263
|
4.0
|
38.4
|
1.0
|
OD1
|
B:ASP221
|
4.0
|
59.8
|
1.0
|
N
|
B:SER263
|
4.1
|
38.0
|
1.0
|
CB
|
B:ASP272
|
4.1
|
37.1
|
1.0
|
CA
|
B:CA802
|
4.1
|
48.2
|
1.0
|
OG1
|
B:THR265
|
4.2
|
39.2
|
1.0
|
CA
|
B:TYR260
|
4.2
|
47.0
|
1.0
|
N
|
B:GLU262
|
4.3
|
44.3
|
1.0
|
N
|
B:TYR260
|
4.3
|
44.3
|
1.0
|
O
|
B:SER263
|
4.4
|
43.2
|
1.0
|
C
|
B:SER263
|
4.4
|
37.8
|
1.0
|
CA
|
B:GLU262
|
4.4
|
41.9
|
1.0
|
OD1
|
B:ASP272
|
4.4
|
41.8
|
1.0
|
N
|
B:SER259
|
4.5
|
40.0
|
1.0
|
CG
|
B:GLU230
|
4.5
|
41.0
|
1.0
|
OG
|
B:SER258
|
4.5
|
46.0
|
1.0
|
C
|
B:TYR260
|
4.5
|
43.9
|
1.0
|
CA
|
B:SER259
|
4.5
|
44.0
|
1.0
|
CB
|
B:ASP223
|
4.6
|
49.0
|
1.0
|
CB
|
B:ASP221
|
4.6
|
49.3
|
1.0
|
CB
|
B:SER258
|
4.6
|
42.5
|
1.0
|
O
|
B:TYR260
|
4.9
|
48.8
|
1.0
|
N
|
B:LEU261
|
4.9
|
40.6
|
1.0
|
|
Calcium binding site 4 out
of 14 in 8yrm
Go back to
Calcium Binding Sites List in 8yrm
Calcium binding site 4 out
of 14 in the Iota Toxin Ib Pore Serine-Clamp Mutant
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Iota Toxin Ib Pore Serine-Clamp Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca802
b:48.2
occ:1.00
|
OD1
|
B:ASP221
|
2.1
|
59.8
|
1.0
|
OD1
|
B:ASP223
|
2.1
|
49.1
|
1.0
|
OD1
|
B:ASP219
|
2.3
|
60.5
|
1.0
|
OE2
|
B:GLU230
|
2.3
|
43.9
|
1.0
|
O
|
B:ILE225
|
2.3
|
46.3
|
1.0
|
CG
|
B:ASP221
|
3.0
|
48.6
|
1.0
|
CG
|
B:ASP223
|
3.2
|
47.7
|
1.0
|
OD2
|
B:ASP221
|
3.4
|
52.0
|
1.0
|
CG
|
B:ASP219
|
3.4
|
55.9
|
1.0
|
CD
|
B:GLU230
|
3.5
|
41.9
|
1.0
|
C
|
B:ILE225
|
3.5
|
49.1
|
1.0
|
OD2
|
B:ASP223
|
3.7
|
48.4
|
1.0
|
OD1
|
B:ASP227
|
4.0
|
66.0
|
1.0
|
N
|
B:ILE225
|
4.0
|
48.7
|
1.0
|
CA
|
B:CA801
|
4.1
|
37.5
|
1.0
|
CA
|
B:ILE225
|
4.2
|
47.2
|
1.0
|
CG
|
B:GLU230
|
4.2
|
41.0
|
1.0
|
OD2
|
B:ASP219
|
4.2
|
61.3
|
1.0
|
N
|
B:ASP223
|
4.2
|
50.3
|
1.0
|
CB
|
B:ILE225
|
4.3
|
48.8
|
1.0
|
CA
|
B:ASP219
|
4.4
|
54.6
|
1.0
|
CB
|
B:ASP223
|
4.4
|
49.0
|
1.0
|
N
|
B:ASP221
|
4.4
|
46.3
|
1.0
|
O
|
B:TYR260
|
4.4
|
48.8
|
1.0
|
OE1
|
B:GLU230
|
4.4
|
41.5
|
1.0
|
CB
|
B:ASP221
|
4.4
|
49.3
|
1.0
|
CB
|
B:ASP219
|
4.4
|
56.1
|
1.0
|
C
|
B:PRO226
|
4.5
|
53.0
|
1.0
|
N
|
B:PRO226
|
4.6
|
53.3
|
1.0
|
N
|
B:ASN222
|
4.6
|
52.8
|
1.0
|
CA
|
B:TYR260
|
4.7
|
47.0
|
1.0
|
O
|
B:PRO226
|
4.7
|
57.2
|
1.0
|
C
|
B:ASP219
|
4.7
|
55.9
|
1.0
|
CA
|
B:ASP223
|
4.7
|
49.7
|
1.0
|
N
|
B:THR220
|
4.7
|
51.7
|
1.0
|
N
|
B:ASP227
|
4.7
|
53.9
|
1.0
|
CA
|
B:PRO226
|
4.8
|
51.8
|
1.0
|
CA
|
B:ASP221
|
4.8
|
47.8
|
1.0
|
C
|
B:ASP223
|
4.8
|
49.9
|
1.0
|
C
|
B:ASP221
|
4.9
|
49.3
|
1.0
|
C
|
B:TYR260
|
4.9
|
43.9
|
1.0
|
N
|
B:ASN224
|
4.9
|
49.0
|
1.0
|
|
Calcium binding site 5 out
of 14 in 8yrm
Go back to
Calcium Binding Sites List in 8yrm
Calcium binding site 5 out
of 14 in the Iota Toxin Ib Pore Serine-Clamp Mutant
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Iota Toxin Ib Pore Serine-Clamp Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca801
b:37.4
occ:1.00
|
O
|
C:GLU262
|
2.2
|
40.4
|
1.0
|
OD2
|
C:ASP221
|
2.3
|
51.9
|
1.0
|
O
|
C:SER259
|
2.3
|
42.4
|
1.0
|
OD2
|
C:ASP272
|
2.4
|
41.2
|
1.0
|
OE1
|
C:GLU230
|
2.5
|
41.6
|
1.0
|
OD2
|
C:ASP223
|
2.6
|
48.2
|
1.0
|
OE2
|
C:GLU230
|
2.7
|
44.2
|
1.0
|
CD
|
C:GLU230
|
3.0
|
41.8
|
1.0
|
C
|
C:GLU262
|
3.4
|
39.6
|
1.0
|
CG
|
C:ASP221
|
3.4
|
48.5
|
1.0
|
CG
|
C:ASP223
|
3.5
|
47.8
|
1.0
|
CG
|
C:ASP272
|
3.5
|
38.1
|
1.0
|
C
|
C:SER259
|
3.5
|
45.1
|
1.0
|
OD1
|
C:ASP223
|
3.9
|
49.0
|
1.0
|
CA
|
C:SER263
|
4.0
|
38.3
|
1.0
|
OD1
|
C:ASP221
|
4.0
|
59.7
|
1.0
|
N
|
C:SER263
|
4.1
|
38.1
|
1.0
|
CB
|
C:ASP272
|
4.1
|
37.1
|
1.0
|
CA
|
C:CA802
|
4.1
|
48.2
|
1.0
|
OG1
|
C:THR265
|
4.2
|
39.1
|
1.0
|
CA
|
C:TYR260
|
4.2
|
47.1
|
1.0
|
N
|
C:GLU262
|
4.3
|
44.2
|
1.0
|
N
|
C:TYR260
|
4.3
|
44.2
|
1.0
|
O
|
C:SER263
|
4.4
|
43.1
|
1.0
|
C
|
C:SER263
|
4.4
|
37.9
|
1.0
|
CA
|
C:GLU262
|
4.4
|
41.9
|
1.0
|
OD1
|
C:ASP272
|
4.4
|
42.2
|
1.0
|
N
|
C:SER259
|
4.5
|
40.1
|
1.0
|
CG
|
C:GLU230
|
4.5
|
40.9
|
1.0
|
OG
|
C:SER258
|
4.5
|
45.6
|
1.0
|
C
|
C:TYR260
|
4.5
|
43.8
|
1.0
|
CA
|
C:SER259
|
4.5
|
43.8
|
1.0
|
CB
|
C:ASP223
|
4.6
|
48.8
|
1.0
|
CB
|
C:ASP221
|
4.6
|
49.3
|
1.0
|
CB
|
C:SER258
|
4.6
|
42.3
|
1.0
|
O
|
C:TYR260
|
4.9
|
48.9
|
1.0
|
N
|
C:LEU261
|
4.9
|
40.6
|
1.0
|
C
|
C:SER258
|
5.0
|
39.0
|
1.0
|
|
Calcium binding site 6 out
of 14 in 8yrm
Go back to
Calcium Binding Sites List in 8yrm
Calcium binding site 6 out
of 14 in the Iota Toxin Ib Pore Serine-Clamp Mutant
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Iota Toxin Ib Pore Serine-Clamp Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca802
b:48.2
occ:1.00
|
OD1
|
C:ASP221
|
2.1
|
59.7
|
1.0
|
OD1
|
C:ASP223
|
2.1
|
49.0
|
1.0
|
OD1
|
C:ASP219
|
2.3
|
60.4
|
1.0
|
OE2
|
C:GLU230
|
2.3
|
44.2
|
1.0
|
O
|
C:ILE225
|
2.3
|
46.1
|
1.0
|
CG
|
C:ASP221
|
3.1
|
48.5
|
1.0
|
CG
|
C:ASP223
|
3.2
|
47.8
|
1.0
|
OD2
|
C:ASP221
|
3.4
|
51.9
|
1.0
|
CG
|
C:ASP219
|
3.4
|
55.9
|
1.0
|
CD
|
C:GLU230
|
3.5
|
41.8
|
1.0
|
C
|
C:ILE225
|
3.5
|
49.0
|
1.0
|
OD2
|
C:ASP223
|
3.7
|
48.2
|
1.0
|
OD1
|
C:ASP227
|
4.0
|
66.1
|
1.0
|
N
|
C:ILE225
|
4.0
|
48.8
|
1.0
|
CA
|
C:CA801
|
4.1
|
37.4
|
1.0
|
CA
|
C:ILE225
|
4.1
|
47.2
|
1.0
|
CG
|
C:GLU230
|
4.2
|
40.9
|
1.0
|
OD2
|
C:ASP219
|
4.2
|
61.4
|
1.0
|
N
|
C:ASP223
|
4.2
|
50.0
|
1.0
|
CB
|
C:ILE225
|
4.3
|
48.8
|
1.0
|
CA
|
C:ASP219
|
4.4
|
54.6
|
1.0
|
CB
|
C:ASP223
|
4.4
|
48.8
|
1.0
|
N
|
C:ASP221
|
4.4
|
46.2
|
1.0
|
O
|
C:TYR260
|
4.4
|
48.9
|
1.0
|
OE1
|
C:GLU230
|
4.4
|
41.6
|
1.0
|
CB
|
C:ASP221
|
4.4
|
49.3
|
1.0
|
CB
|
C:ASP219
|
4.4
|
56.2
|
1.0
|
C
|
C:PRO226
|
4.5
|
52.8
|
1.0
|
N
|
C:PRO226
|
4.6
|
53.3
|
1.0
|
N
|
C:ASN222
|
4.6
|
52.7
|
1.0
|
O
|
C:PRO226
|
4.7
|
57.1
|
1.0
|
CA
|
C:TYR260
|
4.7
|
47.1
|
1.0
|
C
|
C:ASP219
|
4.7
|
55.9
|
1.0
|
N
|
C:THR220
|
4.7
|
51.6
|
1.0
|
CA
|
C:ASP223
|
4.7
|
49.5
|
1.0
|
N
|
C:ASP227
|
4.7
|
53.7
|
1.0
|
CA
|
C:PRO226
|
4.8
|
51.8
|
1.0
|
CA
|
C:ASP221
|
4.8
|
47.8
|
1.0
|
C
|
C:ASP223
|
4.9
|
49.7
|
1.0
|
C
|
C:TYR260
|
4.9
|
43.8
|
1.0
|
C
|
C:ASP221
|
4.9
|
49.2
|
1.0
|
N
|
C:ASN224
|
4.9
|
48.9
|
1.0
|
|
Calcium binding site 7 out
of 14 in 8yrm
Go back to
Calcium Binding Sites List in 8yrm
Calcium binding site 7 out
of 14 in the Iota Toxin Ib Pore Serine-Clamp Mutant
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Iota Toxin Ib Pore Serine-Clamp Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca801
b:37.4
occ:1.00
|
O
|
D:GLU262
|
2.2
|
40.5
|
1.0
|
OD2
|
D:ASP221
|
2.3
|
51.9
|
1.0
|
O
|
D:SER259
|
2.3
|
42.3
|
1.0
|
OD2
|
D:ASP272
|
2.4
|
41.5
|
1.0
|
OE1
|
D:GLU230
|
2.5
|
41.6
|
1.0
|
OD2
|
D:ASP223
|
2.6
|
48.5
|
1.0
|
OE2
|
D:GLU230
|
2.7
|
44.0
|
1.0
|
CD
|
D:GLU230
|
3.0
|
41.9
|
1.0
|
C
|
D:GLU262
|
3.4
|
39.6
|
1.0
|
CG
|
D:ASP221
|
3.4
|
48.5
|
1.0
|
CG
|
D:ASP223
|
3.5
|
47.7
|
1.0
|
CG
|
D:ASP272
|
3.5
|
38.0
|
1.0
|
C
|
D:SER259
|
3.5
|
45.2
|
1.0
|
OD1
|
D:ASP223
|
3.9
|
48.9
|
1.0
|
CA
|
D:SER263
|
4.0
|
38.4
|
1.0
|
OD1
|
D:ASP221
|
4.0
|
59.7
|
1.0
|
N
|
D:SER263
|
4.1
|
38.1
|
1.0
|
CB
|
D:ASP272
|
4.1
|
37.1
|
1.0
|
CA
|
D:CA802
|
4.1
|
48.2
|
1.0
|
OG1
|
D:THR265
|
4.2
|
39.1
|
1.0
|
CA
|
D:TYR260
|
4.2
|
47.1
|
1.0
|
N
|
D:GLU262
|
4.3
|
44.2
|
1.0
|
N
|
D:TYR260
|
4.3
|
44.4
|
1.0
|
O
|
D:SER263
|
4.4
|
43.0
|
1.0
|
C
|
D:SER263
|
4.4
|
37.9
|
1.0
|
CA
|
D:GLU262
|
4.4
|
42.0
|
1.0
|
OD1
|
D:ASP272
|
4.4
|
42.0
|
1.0
|
N
|
D:SER259
|
4.5
|
40.1
|
1.0
|
CG
|
D:GLU230
|
4.5
|
40.9
|
1.0
|
OG
|
D:SER258
|
4.5
|
45.8
|
1.0
|
C
|
D:TYR260
|
4.5
|
43.8
|
1.0
|
CA
|
D:SER259
|
4.6
|
43.9
|
1.0
|
CB
|
D:ASP223
|
4.6
|
48.9
|
1.0
|
CB
|
D:ASP221
|
4.6
|
49.2
|
1.0
|
CB
|
D:SER258
|
4.6
|
42.4
|
1.0
|
O
|
D:TYR260
|
4.9
|
48.7
|
1.0
|
N
|
D:LEU261
|
4.9
|
40.6
|
1.0
|
|
Calcium binding site 8 out
of 14 in 8yrm
Go back to
Calcium Binding Sites List in 8yrm
Calcium binding site 8 out
of 14 in the Iota Toxin Ib Pore Serine-Clamp Mutant
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Iota Toxin Ib Pore Serine-Clamp Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca802
b:48.2
occ:1.00
|
OD1
|
D:ASP221
|
2.1
|
59.7
|
1.0
|
OD1
|
D:ASP223
|
2.1
|
48.9
|
1.0
|
OD1
|
D:ASP219
|
2.2
|
60.6
|
1.0
|
OE2
|
D:GLU230
|
2.3
|
44.0
|
1.0
|
O
|
D:ILE225
|
2.3
|
46.2
|
1.0
|
CG
|
D:ASP221
|
3.1
|
48.5
|
1.0
|
CG
|
D:ASP223
|
3.2
|
47.7
|
1.0
|
OD2
|
D:ASP221
|
3.4
|
51.9
|
1.0
|
CG
|
D:ASP219
|
3.4
|
55.9
|
1.0
|
CD
|
D:GLU230
|
3.5
|
41.9
|
1.0
|
C
|
D:ILE225
|
3.5
|
49.1
|
1.0
|
OD2
|
D:ASP223
|
3.7
|
48.5
|
1.0
|
OD1
|
D:ASP227
|
4.0
|
66.1
|
1.0
|
N
|
D:ILE225
|
4.0
|
48.8
|
1.0
|
CA
|
D:CA801
|
4.1
|
37.4
|
1.0
|
CA
|
D:ILE225
|
4.1
|
47.2
|
1.0
|
CG
|
D:GLU230
|
4.2
|
40.9
|
1.0
|
OD2
|
D:ASP219
|
4.2
|
61.2
|
1.0
|
N
|
D:ASP223
|
4.2
|
50.2
|
1.0
|
CB
|
D:ILE225
|
4.3
|
48.8
|
1.0
|
CA
|
D:ASP219
|
4.4
|
54.5
|
1.0
|
CB
|
D:ASP223
|
4.4
|
48.9
|
1.0
|
N
|
D:ASP221
|
4.4
|
46.2
|
1.0
|
O
|
D:TYR260
|
4.4
|
48.7
|
1.0
|
OE1
|
D:GLU230
|
4.4
|
41.6
|
1.0
|
CB
|
D:ASP221
|
4.4
|
49.2
|
1.0
|
CB
|
D:ASP219
|
4.4
|
56.0
|
1.0
|
C
|
D:PRO226
|
4.5
|
53.0
|
1.0
|
N
|
D:PRO226
|
4.6
|
53.3
|
1.0
|
N
|
D:ASN222
|
4.6
|
52.8
|
1.0
|
O
|
D:PRO226
|
4.7
|
57.4
|
1.0
|
CA
|
D:TYR260
|
4.7
|
47.1
|
1.0
|
C
|
D:ASP219
|
4.7
|
55.7
|
1.0
|
CA
|
D:ASP223
|
4.7
|
49.6
|
1.0
|
N
|
D:THR220
|
4.7
|
51.6
|
1.0
|
N
|
D:ASP227
|
4.7
|
53.9
|
1.0
|
CA
|
D:PRO226
|
4.8
|
51.9
|
1.0
|
CA
|
D:ASP221
|
4.8
|
47.7
|
1.0
|
C
|
D:ASP223
|
4.8
|
49.8
|
1.0
|
C
|
D:ASP221
|
4.9
|
49.2
|
1.0
|
C
|
D:TYR260
|
4.9
|
43.8
|
1.0
|
N
|
D:ASN224
|
4.9
|
48.9
|
1.0
|
|
Calcium binding site 9 out
of 14 in 8yrm
Go back to
Calcium Binding Sites List in 8yrm
Calcium binding site 9 out
of 14 in the Iota Toxin Ib Pore Serine-Clamp Mutant
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Iota Toxin Ib Pore Serine-Clamp Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca801
b:37.5
occ:1.00
|
O
|
E:GLU262
|
2.2
|
40.5
|
1.0
|
OD2
|
E:ASP221
|
2.3
|
52.1
|
1.0
|
O
|
E:SER259
|
2.3
|
42.4
|
1.0
|
OD2
|
E:ASP272
|
2.4
|
41.2
|
1.0
|
OE1
|
E:GLU230
|
2.5
|
41.4
|
1.0
|
OD2
|
E:ASP223
|
2.6
|
48.3
|
1.0
|
OE2
|
E:GLU230
|
2.7
|
43.9
|
1.0
|
CD
|
E:GLU230
|
3.0
|
41.8
|
1.0
|
C
|
E:GLU262
|
3.4
|
39.6
|
1.0
|
CG
|
E:ASP221
|
3.4
|
48.5
|
1.0
|
CG
|
E:ASP223
|
3.5
|
47.6
|
1.0
|
CG
|
E:ASP272
|
3.5
|
38.0
|
1.0
|
C
|
E:SER259
|
3.5
|
45.2
|
1.0
|
OD1
|
E:ASP223
|
3.9
|
48.7
|
1.0
|
CA
|
E:SER263
|
4.0
|
38.3
|
1.0
|
OD1
|
E:ASP221
|
4.0
|
59.6
|
1.0
|
N
|
E:SER263
|
4.1
|
38.0
|
1.0
|
CB
|
E:ASP272
|
4.1
|
37.1
|
1.0
|
CA
|
E:CA802
|
4.1
|
48.1
|
1.0
|
OG1
|
E:THR265
|
4.2
|
39.3
|
1.0
|
CA
|
E:TYR260
|
4.2
|
47.1
|
1.0
|
N
|
E:GLU262
|
4.3
|
44.2
|
1.0
|
N
|
E:TYR260
|
4.3
|
44.3
|
1.0
|
O
|
E:SER263
|
4.4
|
43.2
|
1.0
|
C
|
E:SER263
|
4.4
|
37.7
|
1.0
|
CA
|
E:GLU262
|
4.4
|
41.8
|
1.0
|
OD1
|
E:ASP272
|
4.4
|
42.0
|
1.0
|
N
|
E:SER259
|
4.5
|
40.0
|
1.0
|
CG
|
E:GLU230
|
4.5
|
40.9
|
1.0
|
C
|
E:TYR260
|
4.5
|
43.9
|
1.0
|
OG
|
E:SER258
|
4.5
|
45.8
|
1.0
|
CA
|
E:SER259
|
4.5
|
43.8
|
1.0
|
CB
|
E:ASP223
|
4.6
|
48.9
|
1.0
|
CB
|
E:ASP221
|
4.6
|
49.3
|
1.0
|
CB
|
E:SER258
|
4.6
|
42.4
|
1.0
|
O
|
E:TYR260
|
4.9
|
48.8
|
1.0
|
N
|
E:LEU261
|
4.9
|
40.6
|
1.0
|
|
Calcium binding site 10 out
of 14 in 8yrm
Go back to
Calcium Binding Sites List in 8yrm
Calcium binding site 10 out
of 14 in the Iota Toxin Ib Pore Serine-Clamp Mutant
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Iota Toxin Ib Pore Serine-Clamp Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca802
b:48.1
occ:1.00
|
OD1
|
E:ASP221
|
2.1
|
59.6
|
1.0
|
OD1
|
E:ASP223
|
2.1
|
48.7
|
1.0
|
OD1
|
E:ASP219
|
2.3
|
60.4
|
1.0
|
OE2
|
E:GLU230
|
2.3
|
43.9
|
1.0
|
O
|
E:ILE225
|
2.3
|
45.9
|
1.0
|
CG
|
E:ASP221
|
3.0
|
48.5
|
1.0
|
CG
|
E:ASP223
|
3.2
|
47.6
|
1.0
|
OD2
|
E:ASP221
|
3.4
|
52.1
|
1.0
|
CG
|
E:ASP219
|
3.4
|
56.0
|
1.0
|
CD
|
E:GLU230
|
3.5
|
41.8
|
1.0
|
C
|
E:ILE225
|
3.5
|
49.0
|
1.0
|
OD2
|
E:ASP223
|
3.7
|
48.3
|
1.0
|
OD1
|
E:ASP227
|
4.0
|
66.0
|
1.0
|
N
|
E:ILE225
|
4.1
|
48.7
|
1.0
|
CA
|
E:CA801
|
4.1
|
37.5
|
1.0
|
CA
|
E:ILE225
|
4.2
|
47.2
|
1.0
|
CG
|
E:GLU230
|
4.2
|
40.9
|
1.0
|
OD2
|
E:ASP219
|
4.2
|
61.8
|
1.0
|
N
|
E:ASP223
|
4.2
|
50.2
|
1.0
|
CB
|
E:ILE225
|
4.3
|
48.8
|
1.0
|
CA
|
E:ASP219
|
4.4
|
54.7
|
1.0
|
N
|
E:ASP221
|
4.4
|
46.3
|
1.0
|
CB
|
E:ASP223
|
4.4
|
48.9
|
1.0
|
O
|
E:TYR260
|
4.4
|
48.8
|
1.0
|
OE1
|
E:GLU230
|
4.4
|
41.4
|
1.0
|
CB
|
E:ASP221
|
4.4
|
49.3
|
1.0
|
CB
|
E:ASP219
|
4.4
|
56.1
|
1.0
|
C
|
E:PRO226
|
4.5
|
52.9
|
1.0
|
N
|
E:PRO226
|
4.6
|
53.2
|
1.0
|
N
|
E:ASN222
|
4.6
|
52.8
|
1.0
|
CA
|
E:TYR260
|
4.7
|
47.1
|
1.0
|
O
|
E:PRO226
|
4.7
|
57.3
|
1.0
|
C
|
E:ASP219
|
4.7
|
56.0
|
1.0
|
N
|
E:THR220
|
4.7
|
51.7
|
1.0
|
CA
|
E:ASP223
|
4.7
|
49.5
|
1.0
|
N
|
E:ASP227
|
4.7
|
53.8
|
1.0
|
CA
|
E:PRO226
|
4.8
|
51.7
|
1.0
|
CA
|
E:ASP221
|
4.8
|
47.8
|
1.0
|
C
|
E:ASP223
|
4.9
|
49.8
|
1.0
|
C
|
E:TYR260
|
4.9
|
43.9
|
1.0
|
C
|
E:ASP221
|
4.9
|
49.3
|
1.0
|
N
|
E:ASN224
|
4.9
|
48.9
|
1.0
|
|
Reference:
T.Yoshida,
C.Monma,
Y.Mitani,
S.Takiguchi,
S.Fujita,
Y.Uchida,
V.A.Karginov,
T.Yamada,
J.Kishikawa,
R.Kawano,
H.Tsuge.
Serine Clamp of Clostridium Perfringens Binary Toxin Cpileb-Pore Confers Cytotoxicity and Enterotoxicity To Be Published.
Page generated: Thu Jul 10 08:33:40 2025
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