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Calcium in PDB 8yt7: Crystal Structure of the Mam Domain of Spodoptera Frugiperda Scavenger Receptor-C

Protein crystallography data

The structure of Crystal Structure of the Mam Domain of Spodoptera Frugiperda Scavenger Receptor-C, PDB code: 8yt7 was solved by J.Lan, C.H.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.02 / 2.25
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 57.02, 57.02, 159.934, 90, 90, 120
R / Rfree (%) 24.7 / 26.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Mam Domain of Spodoptera Frugiperda Scavenger Receptor-C (pdb code 8yt7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Mam Domain of Spodoptera Frugiperda Scavenger Receptor-C, PDB code: 8yt7:

Calcium binding site 1 out of 1 in 8yt7

Go back to Calcium Binding Sites List in 8yt7
Calcium binding site 1 out of 1 in the Crystal Structure of the Mam Domain of Spodoptera Frugiperda Scavenger Receptor-C


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Mam Domain of Spodoptera Frugiperda Scavenger Receptor-C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:57.2
occ:1.00
OD1 A:ASP305 2.3 51.5 1.0
O A:TYR190 2.3 48.0 1.0
O A:ASP142 2.4 52.9 1.0
OE2 A:GLU144 2.4 62.1 1.0
OD2 A:ASP180 2.5 58.2 1.0
OG1 A:THR182 2.5 60.9 1.0
OD2 A:ASP305 2.5 51.0 1.0
CG A:ASP305 2.8 50.6 1.0
CB A:THR182 3.2 64.6 1.0
C A:TYR190 3.5 49.7 1.0
CG A:ASP180 3.5 59.4 1.0
C A:ASP142 3.6 54.5 1.0
CD A:GLU144 3.7 64.8 1.0
CB A:ASP180 3.8 56.3 1.0
N A:TYR190 3.9 52.8 1.0
N A:THR182 4.0 64.4 1.0
OD1 A:ASP306 4.2 55.1 1.0
CA A:TYR190 4.2 53.2 1.0
CA A:THR182 4.2 64.1 1.0
CA A:ASP142 4.2 53.7 1.0
CB A:ASP305 4.3 49.3 1.0
CB A:ASP142 4.3 54.7 1.0
CG2 A:THR182 4.4 65.2 1.0
N A:TYR191 4.5 53.5 1.0
OE1 A:GLU144 4.5 67.1 1.0
OD1 A:ASP180 4.5 59.3 1.0
CG A:GLU144 4.6 64.1 1.0
N A:PHE143 4.6 54.3 1.0
CB A:PHE143 4.7 51.0 1.0
C A:GLY189 4.7 62.3 1.0
CA A:TYR191 4.7 51.6 1.0
N A:HIS181 4.8 55.8 1.0
CB A:TYR190 4.8 53.3 1.0
C A:PHE143 4.9 56.2 1.0
CG A:ASP306 4.9 52.3 1.0
CA A:PHE143 5.0 52.5 1.0
N A:GLU144 5.0 61.5 1.0

Reference:

J.Lan, C.H.Wang. Crystal Structure of the Mam Domain of Spodoptera Frugiperda Scavenger Receptor-C To Be Published.
Page generated: Thu Jul 10 08:34:57 2025

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