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Calcium in PDB 8z4e: Structure of Human 18_14D Scfv and 1G01 Scfv in Complex with Influenza Virus Neuraminidase From A/Yunan/DQ001/2016 (H5N6)

Enzymatic activity of Structure of Human 18_14D Scfv and 1G01 Scfv in Complex with Influenza Virus Neuraminidase From A/Yunan/DQ001/2016 (H5N6)

All present enzymatic activity of Structure of Human 18_14D Scfv and 1G01 Scfv in Complex with Influenza Virus Neuraminidase From A/Yunan/DQ001/2016 (H5N6):
3.2.1.18;

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Human 18_14D Scfv and 1G01 Scfv in Complex with Influenza Virus Neuraminidase From A/Yunan/DQ001/2016 (H5N6) (pdb code 8z4e). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Human 18_14D Scfv and 1G01 Scfv in Complex with Influenza Virus Neuraminidase From A/Yunan/DQ001/2016 (H5N6), PDB code: 8z4e:

Calcium binding site 1 out of 1 in 8z4e

Go back to Calcium Binding Sites List in 8z4e
Calcium binding site 1 out of 1 in the Structure of Human 18_14D Scfv and 1G01 Scfv in Complex with Influenza Virus Neuraminidase From A/Yunan/DQ001/2016 (H5N6)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Human 18_14D Scfv and 1G01 Scfv in Complex with Influenza Virus Neuraminidase From A/Yunan/DQ001/2016 (H5N6) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:50.2
occ:1.00
O A:PRO348 2.4 53.0 1.0
O A:GLY298 2.4 57.9 1.0
O A:ASP294 2.5 56.3 1.0
OD2 A:ASP325 3.4 55.2 1.0
C A:GLY298 3.6 57.9 1.0
C A:PRO348 3.6 53.0 1.0
C A:ASP294 3.7 56.3 1.0
CA A:GLY349 4.1 53.5 1.0
CA A:ALA299 4.1 57.8 1.0
N A:ALA299 4.2 57.8 1.0
N A:GLY349 4.3 53.5 1.0
CG A:ASP325 4.3 55.2 1.0
CA A:ASN295 4.5 56.0 1.0
N A:ASN295 4.6 56.0 1.0
C A:ASN295 4.6 56.0 1.0
N A:GLY298 4.7 57.9 1.0
CA A:PRO348 4.7 53.0 1.0
CA A:GLY298 4.7 57.9 1.0
CA A:ASP294 4.7 56.3 1.0
O A:LYS297 4.8 59.8 1.0
CB A:ASP294 4.8 56.3 1.0
O A:ASN295 4.8 56.0 1.0
C A:LYS297 4.8 59.8 1.0
CB A:ALA299 4.9 57.8 1.0
N A:ASP294 5.0 56.3 1.0

Reference:

M.Wang, Y.Gao, C.Shen, W.Yang, Q.Peng, J.Cheng, H.M.Shen, Y.Yang, G.F.Gao, Y.Shi. A Human Monoclonal Antibody Targeting the Monomeric N6 Neuraminidase Confers Protection Against Avian H5N6 Influenza Virus Infection. Nat Commun V. 15 8871 2024.
ISSN: ESSN 2041-1723
PubMed: 39402031
DOI: 10.1038/S41467-024-53301-6
Page generated: Sat Feb 8 16:16:55 2025

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