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Calcium in PDB 9ayf: Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent

Other elements in 9ayf:

The structure of Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent (pdb code 9ayf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent, PDB code: 9ayf:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 9ayf

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Calcium binding site 1 out of 8 in the Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Ca1006

b:44.3
occ:1.00
 O Q:LEU87 2.3 29.5 1.0
O Q:SER84 2.8 27.2 1.0
O Q:LEU88 2.8 29.4 1.0
O Q:ILE81 3.0 18.4 1.0
C Q:LEU87 3.6 29.5 1.0
C Q:LEU88 3.6 29.4 1.0
O Q:ASN82 3.8 19.6 1.0
C Q:SER84 4.0 27.2 1.0
C Q:ILE81 4.0 18.4 1.0
CA Q:ASN82 4.2 19.6 1.0
CB Q:LEU88 4.2 29.4 1.0
O Q:LEU91 4.2 29.3 1.0
C Q:ASN82 4.2 19.6 1.0
CA Q:LEU88 4.2 29.4 1.0
N Q:LEU88 4.3 29.4 1.0
N Q:PRO89 4.4 31.1 1.0
N Q:ASN82 4.6 19.6 1.0
CA Q:PRO89 4.6 31.1 1.0
CA Q:LEU87 4.7 29.5 1.0
CA Q:PRO85 4.7 31.3 1.0
CG2 Q:ILE81 4.7 18.4 1.0
O Q:PRO85 4.8 31.3 1.0
N Q:LEU87 4.8 29.5 1.0
N Q:SER84 4.9 27.2 1.0
N Q:PRO85 4.9 31.3 1.0
C Q:PRO85 4.9 31.3 1.0
CB Q:LEU87 4.9 29.5 1.0
CA Q:SER84 5.0 27.2 1.0

Calcium binding site 2 out of 8 in 9ayf

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Calcium binding site 2 out of 8 in the Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Ca1007

b:33.0
occ:1.00
 OG1 Q:THR100 2.9 16.4 1.0
N Q:THR145 3.3 11.4 1.0
OG1 Q:THR145 3.6 11.4 1.0
CB Q:THR145 3.6 11.4 1.0
CB Q:ALA144 3.7 9.8 1.0
CB Q:THR100 3.9 16.4 1.0
CG2 Q:THR100 4.0 16.4 1.0
CA Q:THR145 4.0 11.4 1.0
OD1 Q:ASN102 4.1 16.9 1.0
CB Q:PRO39 4.1 14.2 1.0
CG Q:PRO39 4.2 14.2 1.0
N Q:GLY146 4.2 12.1 1.0
CD Q:PRO39 4.2 14.2 1.0
N Q:PRO39 4.3 14.2 1.0
C Q:ALA144 4.3 9.8 1.0
CA Q:ALA144 4.3 9.8 1.0
C Q:PHE38 4.6 12.2 1.0
CA Q:PRO39 4.6 14.2 1.0
C Q:THR145 4.6 11.4 1.0
CG1 Q:VAL149 4.7 7.6 1.0
O Q:LEU37 4.9 11.0 1.0
N Q:ASN102 4.9 16.9 1.0
CA Q:ASN102 4.9 16.9 1.0
CA Q:PHE38 5.0 12.2 1.0
CG2 Q:THR145 5.0 11.4 1.0
OH Q:TYR167 5.0 9.1 1.0

Calcium binding site 3 out of 8 in 9ayf

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Calcium binding site 3 out of 8 in the Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Ca1008

b:44.6
occ:1.00
 NH1 Q:ARG66 3.6 17.1 1.0
N Q:SER303 3.9 16.4 1.0
OG Q:SER302 3.9 15.8 1.0
CA Q:SER302 3.9 15.8 1.0
CD Q:ARG66 4.1 17.1 1.0
OG Q:SER303 4.2 16.4 1.0
CB Q:SER302 4.3 15.8 1.0
CZ Q:PHE42 4.4 18.6 1.0
C Q:SER302 4.5 15.8 1.0
CE1 Q:PHE42 4.5 18.6 1.0
CZ Q:ARG66 4.7 17.1 1.0
CH2 Q:TCR1004 4.9 10.0 1.0
O Q:SER301 4.9 12.9 1.0
NE Q:ARG66 4.9 17.1 1.0
CB Q:SER303 4.9 16.4 1.0
OD1 Q:ASN64 4.9 18.6 1.0
N Q:SER302 5.0 15.8 1.0
CA Q:SER303 5.0 16.4 1.0

Calcium binding site 4 out of 8 in 9ayf

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Calcium binding site 4 out of 8 in the Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Ca1009

b:40.2
occ:1.00
 O Q:GLY557 3.3 41.7 1.0
OD1 R:ASP234 3.6 20.8 1.0
O R:GLU231 3.6 20.6 1.0
OD2 R:ASP234 3.7 20.8 1.0
CG R:ASP234 3.8 20.8 1.0
O R:GLU232 4.1 21.7 1.0
C Q:GLY557 4.5 41.7 1.0
C R:GLU232 4.8 21.7 1.0
N R:ASP234 4.8 20.8 1.0
C R:GLU231 4.8 20.6 1.0
CA R:ASP234 4.9 20.8 1.0
CB R:ASP234 5.0 20.8 1.0

Calcium binding site 5 out of 8 in 9ayf

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Calcium binding site 5 out of 8 in the Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Ca1006

b:45.7
occ:1.00
 O R:LEU87 2.5 30.2 1.0
O R:ILE81 2.8 19.1 1.0
O R:LEU88 2.8 31.0 1.0
O R:SER84 2.9 29.3 1.0
C R:LEU88 3.5 31.0 1.0
C R:LEU87 3.7 30.2 1.0
C R:ILE81 3.9 19.1 1.0
C R:SER84 3.9 29.3 1.0
CB R:LEU88 4.0 31.0 1.0
N R:SER84 4.0 29.3 1.0
O R:ASN82 4.1 20.0 1.0
C R:ASN82 4.1 20.0 1.0
CA R:LEU88 4.1 31.0 1.0
O R:LEU91 4.1 31.4 1.0
CA R:ASN82 4.2 20.0 1.0
N R:PRO89 4.2 33.1 1.0
N R:LEU88 4.3 31.0 1.0
CA R:SER84 4.4 29.3 1.0
CD R:PRO89 4.4 33.1 1.0
N R:ASN82 4.5 20.0 1.0
CB R:SER84 4.6 29.3 1.0
CA R:PRO89 4.7 33.1 1.0
N R:SER83 4.7 23.7 1.0
CA R:LEU87 4.8 30.2 1.0
CG2 R:ILE81 4.9 19.1 1.0
N R:LEU87 5.0 30.2 1.0

Calcium binding site 6 out of 8 in 9ayf

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Calcium binding site 6 out of 8 in the Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Ca1007

b:23.8
occ:1.00
 OG1 R:THR100 2.9 13.3 1.0
N R:THR145 3.3 8.5 1.0
CB R:ALA144 3.3 9.1 1.0
OG1 R:THR145 3.6 8.5 1.0
CB R:THR145 3.7 8.5 1.0
CB R:THR100 3.8 13.3 1.0
CG2 R:THR100 4.0 13.3 1.0
CD R:PRO39 4.0 12.2 1.0
CA R:THR145 4.0 8.5 1.0
OD1 R:ASN102 4.1 14.5 1.0
CA R:ALA144 4.1 9.1 1.0
C R:ALA144 4.2 9.1 1.0
N R:GLY146 4.3 9.8 1.0
N R:PRO39 4.3 12.2 1.0
CG R:PRO39 4.4 12.2 1.0
CB R:PRO39 4.5 12.2 1.0
CG1 R:VAL149 4.5 8.1 1.0
O R:LEU37 4.6 9.3 1.0
C R:PHE38 4.6 10.0 1.0
C R:THR145 4.7 8.5 1.0
CA R:PRO39 4.8 12.2 1.0
OH R:TYR167 4.9 7.8 1.0
CA R:PHE38 4.9 10.0 1.0
CA R:ASN102 4.9 14.5 1.0
N R:ASN102 4.9 14.5 1.0
C R:LEU37 4.9 9.3 1.0
CB R:VAL149 4.9 8.1 1.0

Calcium binding site 7 out of 8 in 9ayf

Go back to Calcium Binding Sites List in 9ayf
Calcium binding site 7 out of 8 in the Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Ca1008

b:32.5
occ:1.00
 OG R:SER302 3.7 15.6 1.0
NH1 R:ARG66 3.7 11.3 1.0
CA R:SER302 3.8 15.6 1.0
CB R:SER302 4.0 15.6 1.0
N R:SER303 4.3 16.9 1.0
CH2 R:TCR1004 4.5 8.4 1.0
C R:SER302 4.6 15.6 1.0
CE1 R:PHE42 4.6 15.2 1.0
CZ3 R:TCR1004 4.6 8.4 1.0
CD R:ARG66 4.7 11.3 1.0
CZ R:ARG66 4.8 11.3 1.0
OG R:SER303 4.8 16.9 1.0
N R:SER302 4.9 15.6 1.0
O R:SER301 4.9 13.4 1.0
CZ R:PHE42 5.0 15.2 1.0

Calcium binding site 8 out of 8 in 9ayf

Go back to Calcium Binding Sites List in 9ayf
Calcium binding site 8 out of 8 in the Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Human Calcium-Sensing Receptor in Complex with GI1 (MINIGI1) Protein in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Ca1009

b:39.4
occ:1.00
 O R:GLY557 2.4 45.7 1.0
OD1 Q:ASP234 3.1 19.8 1.0
C R:GLY557 3.4 45.7 1.0
CA R:GLY557 4.1 45.7 1.0
CG Q:ASP234 4.2 19.8 1.0
O Q:GLU231 4.3 18.6 1.0
N R:GLU558 4.4 44.4 1.0
OE1 R:GLU558 4.5 44.4 1.0
OD2 Q:ASP234 4.6 19.8 1.0
CA R:GLU558 4.7 44.4 1.0
OE1 Q:GLU231 4.8 18.6 1.0

Reference:

H.Zuo, J.Park, A.Frangaj, J.Ye, G.Lu, J.J.Manning, W.B.Asher, Z.Lu, G.Hu, L.Wang, J.Mendez, E.Eng, Z.Zhang, X.Lin, R.Grasucci, W.A.Hendrickson, O.B.Clarke, J.A.Javitch, A.D.Conigrave, Q.R.Fan. Promiscuous G-Protein Activation By the Calcium-Sensing Receptor Nature 2024.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-024-07331-1
Page generated: Thu Jul 10 08:51:58 2025

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