Calcium in PDB 9b9g: Structure of the PI4KA Complex Bound to Calcineurin

Enzymatic activity of Structure of the PI4KA Complex Bound to Calcineurin

All present enzymatic activity of Structure of the PI4KA Complex Bound to Calcineurin:
2.7.1.67; 3.1.3.16;

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the PI4KA Complex Bound to Calcineurin (pdb code 9b9g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Structure of the PI4KA Complex Bound to Calcineurin, PDB code: 9b9g:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 9b9g

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Calcium binding site 1 out of 8 in the Structure of the PI4KA Complex Bound to Calcineurin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the PI4KA Complex Bound to Calcineurin within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca201

b:146.6
occ:1.00
 OD1 H:ASP60 3.7 295.1 1.0
O H:GLY66 3.9 289.3 1.0
C H:GLY66 4.6 289.3 1.0
N H:GLY68 4.6 281.4 1.0
CA H:GLY68 4.7 281.4 1.0
CG H:ASP60 4.8 295.1 1.0
CA H:GLY66 4.9 289.3 1.0

Calcium binding site 2 out of 8 in 9b9g

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Calcium binding site 2 out of 8 in the Structure of the PI4KA Complex Bound to Calcineurin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the PI4KA Complex Bound to Calcineurin within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca202

b:211.6
occ:1.00
 O H:GLY146 2.6 295.4 1.0
CB H:ASN109 3.3 300.9 1.0
C H:GLY146 3.4 295.4 1.0
CA H:GLY146 3.6 295.4 1.0
ND2 H:ASN109 3.7 300.9 1.0
CG2 H:ILE137 3.8 293.6 1.0
N H:ASN109 3.9 300.9 1.0
CG H:ASN109 4.0 300.9 1.0
CA H:ASN109 4.1 300.9 1.0
CD1 H:ILE137 4.3 293.6 1.0
N H:ARG147 4.7 299.2 1.0
CG1 H:ILE137 4.9 293.6 1.0
CB H:ILE137 4.9 293.6 1.0
N H:GLY146 5.0 295.4 1.0

Calcium binding site 3 out of 8 in 9b9g

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Calcium binding site 3 out of 8 in the Structure of the PI4KA Complex Bound to Calcineurin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the PI4KA Complex Bound to Calcineurin within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca203

b:214.3
occ:1.00
 OE1 H:GLU69 3.6 293.9 1.0
CB H:SER39 3.7 308.6 1.0
OG H:SER39 3.7 308.6 1.0
OE2 H:GLU69 3.8 293.9 1.0
CD H:GLU69 3.9 293.9 1.0
OG H:SER35 4.1 316.1 1.0
OE1 H:GLU41 4.6 319.0 1.0
CG H:GLU42 4.8 325.7 1.0
O H:SER37 4.8 300.5 1.0
N H:SER39 4.8 308.6 1.0
CB H:SER35 4.8 316.1 1.0
CA H:SER39 4.9 308.6 1.0

Calcium binding site 4 out of 8 in 9b9g

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Calcium binding site 4 out of 8 in the Structure of the PI4KA Complex Bound to Calcineurin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of the PI4KA Complex Bound to Calcineurin within 5.0Å range:

Calcium binding site 5 out of 8 in 9b9g

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Calcium binding site 5 out of 8 in the Structure of the PI4KA Complex Bound to Calcineurin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of the PI4KA Complex Bound to Calcineurin within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Ca201

b:269.5
occ:1.00
 O J:MET101 2.5 302.6 1.0
C J:ASP102 3.4 313.9 1.0
CB J:LYS103 3.5 321.3 1.0
CA J:ASP102 3.5 313.9 1.0
C J:MET101 3.5 302.6 1.0
N J:LYS103 3.7 321.3 1.0
O J:ASP102 3.7 313.9 1.0
N J:ASP102 3.9 313.9 1.0
CA J:LYS103 4.2 321.3 1.0
CE J:LYS103 4.2 321.3 1.0
CG J:LYS103 4.6 321.3 1.0
CA J:MET101 4.8 302.6 1.0
CD J:LYS103 4.9 321.3 1.0
CB J:ASP102 4.9 313.9 1.0
NZ J:LYS103 4.9 321.3 1.0
O J:ASP100 4.9 313.7 1.0

Calcium binding site 6 out of 8 in 9b9g

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Calcium binding site 6 out of 8 in the Structure of the PI4KA Complex Bound to Calcineurin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of the PI4KA Complex Bound to Calcineurin within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Ca202

b:189.1
occ:1.00
 O J:ILE138 4.4 305.1 1.0
O J:ASP141 4.9 343.1 1.0

Calcium binding site 7 out of 8 in 9b9g

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Calcium binding site 7 out of 8 in the Structure of the PI4KA Complex Bound to Calcineurin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of the PI4KA Complex Bound to Calcineurin within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Ca203

b:285.2
occ:1.00
 CB J:SER39 2.8 325.2 1.0
OG J:SER39 2.9 325.2 1.0
CB J:GLU41 3.7 329.2 1.0
OD2 J:ASP33 4.0 349.0 1.0
OE2 J:GLU41 4.1 329.2 1.0
CG J:GLU42 4.1 326.9 1.0
CA J:SER39 4.2 325.2 1.0
N J:GLU42 4.3 326.9 1.0
CD J:GLU42 4.4 326.9 1.0
N J:GLU41 4.4 329.2 1.0
CG J:GLU41 4.5 329.2 1.0
CA J:GLU41 4.5 329.2 1.0
OE2 J:GLU42 4.5 326.9 1.0
CD J:GLU41 4.6 329.2 1.0
N J:SER39 4.6 325.2 1.0
C J:SER39 4.7 325.2 1.0
C J:GLU41 4.8 329.2 1.0
CB J:GLU42 4.9 326.9 1.0
OE1 J:GLU42 4.9 326.9 1.0
CG J:ASP33 5.0 349.0 1.0

Calcium binding site 8 out of 8 in 9b9g

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Calcium binding site 8 out of 8 in the Structure of the PI4KA Complex Bound to Calcineurin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of the PI4KA Complex Bound to Calcineurin within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Ca204

b:201.9
occ:0.66
 O J:GLY146 2.6 343.0 1.0
CB J:ASN109 3.5 277.2 1.0
C J:GLY146 3.8 343.0 1.0
CG J:ARG147 3.9 336.3 1.0
N J:ASN109 4.0 277.2 1.0
ND2 J:ASN109 4.1 277.2 1.0
CA J:ASN109 4.3 277.2 1.0
CG J:ASN109 4.4 277.2 1.0
CD1 J:ILE137 4.4 306.3 1.0
CA J:GLY146 4.6 343.0 1.0
N J:ARG147 4.7 336.3 1.0
CA J:ARG147 4.7 336.3 1.0
CG2 J:ILE137 4.8 306.3 1.0
CD J:ARG147 4.8 336.3 1.0
OG1 I:THR14 4.9 275.8 1.0
CB J:ARG147 4.9 336.3 1.0
CG2 I:THR14 4.9 275.8 1.0

Reference:

A.L.Shaw, S.Suresh, M.A.H.Parson, N.J.Harris, M.L.Jenkins, C.K.Yip, J.E.Burke. Structure of Calcineurin Bound to PI4KA Reveals Dual Interface in Both PI4KA and FAM126A. Structure 2024.
ISSN: ISSN 0969-2126
PubMed: 39216471
DOI: 10.1016/J.STR.2024.08.007
Page generated: Sat Sep 28 09:26:32 2024

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