Calcium in PDB 9b9k: Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab
Calcium Binding Sites:
The binding sites of Calcium atom in the Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab
(pdb code 9b9k). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the
Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab, PDB code: 9b9k:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
Calcium binding site 1 out
of 7 in 9b9k
Go back to
Calcium Binding Sites List in 9b9k
Calcium binding site 1 out
of 7 in the Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_01.jpg) Mono view
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1101
b:129.1
occ:1.00
|
HG
|
A:SER241
|
2.1
|
118.0
|
1.0
|
OE1
|
A:GLU239
|
2.3
|
116.8
|
1.0
|
O
|
A:THR245
|
2.3
|
116.2
|
1.0
|
OD1
|
A:ASP243
|
2.3
|
127.5
|
1.0
|
OD1
|
A:ASP247
|
2.3
|
113.0
|
1.0
|
OG
|
A:SER241
|
2.4
|
118.0
|
1.0
|
OD2
|
A:ASP247
|
2.4
|
113.7
|
1.0
|
OE2
|
A:GLU239
|
2.5
|
117.1
|
1.0
|
CG
|
A:ASP247
|
2.7
|
112.8
|
1.0
|
CD
|
A:GLU239
|
2.7
|
116.9
|
1.0
|
H
|
A:SER241
|
3.1
|
117.1
|
1.0
|
HG1
|
A:THR245
|
3.1
|
117.4
|
1.0
|
CG
|
A:ASP243
|
3.1
|
127.5
|
1.0
|
HB3
|
A:SER241
|
3.2
|
117.2
|
1.0
|
H
|
A:ASP243
|
3.3
|
127.8
|
1.0
|
C
|
A:THR245
|
3.3
|
116.0
|
1.0
|
CB
|
A:SER241
|
3.4
|
117.2
|
1.0
|
H
|
A:THR245
|
3.5
|
118.0
|
1.0
|
OD2
|
A:ASP243
|
3.5
|
127.4
|
1.0
|
H
|
A:PHE240
|
3.7
|
113.0
|
1.0
|
HA
|
A:GLU239
|
3.7
|
115.3
|
1.0
|
HA
|
A:GLU246
|
3.8
|
118.0
|
1.0
|
H
|
A:GLY267
|
3.8
|
115.6
|
1.0
|
N
|
A:SER241
|
4.0
|
117.1
|
1.0
|
OG1
|
A:THR245
|
4.0
|
117.4
|
1.0
|
H
|
A:GLY242
|
4.0
|
129.4
|
1.0
|
OD1
|
A:ASN266
|
4.0
|
121.5
|
1.0
|
N
|
A:THR245
|
4.1
|
118.0
|
1.0
|
CB
|
A:ASP247
|
4.2
|
111.8
|
1.0
|
HB2
|
A:SER241
|
4.2
|
117.2
|
1.0
|
N
|
A:ASP247
|
4.2
|
112.4
|
1.0
|
N
|
A:ASP243
|
4.2
|
127.8
|
1.0
|
C
|
A:GLU246
|
4.2
|
117.9
|
1.0
|
CA
|
A:THR245
|
4.2
|
116.3
|
1.0
|
N
|
A:GLU246
|
4.2
|
118.2
|
1.0
|
H
|
A:ASP247
|
4.2
|
112.4
|
1.0
|
CG
|
A:GLU239
|
4.3
|
116.0
|
1.0
|
CA
|
A:SER241
|
4.3
|
117.3
|
1.0
|
CA
|
A:GLU246
|
4.3
|
118.0
|
1.0
|
CB
|
A:ASP243
|
4.3
|
127.3
|
1.0
|
O
|
A:ASP243
|
4.4
|
128.0
|
1.0
|
C
|
A:ASP243
|
4.4
|
127.8
|
1.0
|
CA
|
A:ASP243
|
4.5
|
127.5
|
1.0
|
N
|
A:PHE240
|
4.5
|
113.0
|
1.0
|
HB2
|
A:ASP247
|
4.6
|
111.8
|
1.0
|
CB
|
A:THR245
|
4.6
|
116.1
|
1.0
|
CA
|
A:ASP247
|
4.7
|
111.7
|
1.0
|
CA
|
A:GLU239
|
4.7
|
115.3
|
1.0
|
N
|
A:GLY242
|
4.7
|
129.4
|
1.0
|
HA3
|
A:GLY267
|
4.7
|
114.8
|
1.0
|
O
|
A:GLU246
|
4.7
|
118.0
|
1.0
|
HA
|
A:ASP247
|
4.7
|
111.7
|
1.0
|
HG3
|
A:GLU239
|
4.8
|
116.0
|
1.0
|
N
|
A:GLY267
|
4.8
|
115.6
|
1.0
|
HG2
|
A:GLU239
|
4.8
|
116.0
|
1.0
|
HB3
|
A:ASP247
|
4.8
|
111.8
|
1.0
|
HB
|
A:THR245
|
4.8
|
116.1
|
1.0
|
HB3
|
A:ASP243
|
4.8
|
127.3
|
1.0
|
C
|
A:SER241
|
4.9
|
118.5
|
1.0
|
CB
|
A:GLU239
|
4.9
|
115.0
|
1.0
|
HB2
|
A:GLU239
|
4.9
|
115.0
|
1.0
|
|
Calcium binding site 2 out
of 7 in 9b9k
Go back to
Calcium Binding Sites List in 9b9k
Calcium binding site 2 out
of 7 in the Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_02.jpg) Mono view
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1102
b:142.9
occ:1.00
|
OD1
|
A:ASP297
|
2.3
|
131.7
|
1.0
|
OD2
|
A:ASP301
|
2.3
|
113.8
|
1.0
|
OD1
|
A:ASN295
|
2.4
|
129.3
|
1.0
|
OD1
|
A:ASP293
|
2.4
|
125.6
|
1.0
|
OD1
|
A:ASP301
|
2.4
|
114.2
|
1.0
|
O
|
A:LEU299
|
2.4
|
122.4
|
1.0
|
OD2
|
A:ASP297
|
2.7
|
131.5
|
1.0
|
CG
|
A:ASP301
|
2.7
|
113.4
|
1.0
|
CG
|
A:ASP297
|
2.7
|
131.4
|
1.0
|
H
|
A:ASP297
|
3.2
|
130.7
|
1.0
|
HA
|
A:ASP293
|
3.2
|
124.2
|
1.0
|
H
|
A:ASN295
|
3.3
|
129.0
|
1.0
|
CG
|
A:ASP293
|
3.3
|
125.4
|
1.0
|
H
|
A:LEU299
|
3.3
|
122.7
|
1.0
|
CG
|
A:ASN295
|
3.4
|
129.3
|
1.0
|
HD22
|
A:ASN295
|
3.5
|
129.9
|
1.0
|
HB2
|
A:LEU299
|
3.5
|
122.7
|
1.0
|
C
|
A:LEU299
|
3.5
|
122.3
|
1.0
|
H
|
A:GLY296
|
3.8
|
123.9
|
1.0
|
H
|
A:VAL294
|
3.9
|
122.7
|
1.0
|
ND2
|
A:ASN295
|
3.9
|
129.9
|
1.0
|
HD22
|
A:LEU328
|
3.9
|
112.5
|
1.0
|
H
|
A:GLN329
|
3.9
|
123.9
|
1.0
|
CA
|
A:ASP293
|
4.0
|
124.2
|
1.0
|
CB
|
A:ASP297
|
4.0
|
131.0
|
1.0
|
N
|
A:ASP297
|
4.1
|
130.7
|
1.0
|
N
|
A:LEU299
|
4.1
|
122.7
|
1.0
|
CB
|
A:ASP293
|
4.1
|
124.5
|
1.0
|
OD2
|
A:ASP293
|
4.1
|
125.8
|
1.0
|
CB
|
A:ASP301
|
4.2
|
112.2
|
1.0
|
CA
|
A:LEU299
|
4.2
|
122.4
|
1.0
|
H
|
A:GLY298
|
4.2
|
125.0
|
1.0
|
HB2
|
A:ASP293
|
4.2
|
124.5
|
1.0
|
N
|
A:ASN295
|
4.3
|
129.0
|
1.0
|
N
|
A:VAL294
|
4.3
|
122.7
|
1.0
|
C
|
A:ASP293
|
4.3
|
124.2
|
1.0
|
H
|
A:ASP301
|
4.3
|
112.8
|
1.0
|
HB3
|
A:ASP297
|
4.3
|
131.0
|
1.0
|
N
|
A:ASP301
|
4.4
|
112.8
|
1.0
|
CB
|
A:LEU299
|
4.4
|
122.7
|
1.0
|
N
|
A:GLY296
|
4.5
|
123.9
|
1.0
|
CA
|
A:ASP297
|
4.5
|
130.9
|
1.0
|
O
|
A:GLN329
|
4.5
|
126.6
|
1.0
|
HB3
|
A:GLN329
|
4.6
|
125.5
|
1.0
|
CB
|
A:ASN295
|
4.6
|
128.8
|
1.0
|
HB3
|
A:LEU328
|
4.6
|
112.6
|
1.0
|
C
|
A:ASP300
|
4.6
|
118.4
|
1.0
|
N
|
A:ASP300
|
4.6
|
119.6
|
1.0
|
HB2
|
A:ASP301
|
4.6
|
112.2
|
1.0
|
HA
|
A:ASP300
|
4.7
|
118.9
|
1.0
|
N
|
A:GLY298
|
4.7
|
125.0
|
1.0
|
CA
|
A:ASN295
|
4.8
|
128.6
|
1.0
|
HA
|
A:LEU328
|
4.8
|
112.2
|
1.0
|
CA
|
A:ASP301
|
4.8
|
112.0
|
1.0
|
HB2
|
A:ASP297
|
4.9
|
131.0
|
1.0
|
HB3
|
A:ASP301
|
4.9
|
112.2
|
1.0
|
HD21
|
A:ASN295
|
4.9
|
129.9
|
1.0
|
N
|
A:GLN329
|
4.9
|
123.9
|
1.0
|
C
|
A:ASN295
|
4.9
|
128.2
|
1.0
|
C
|
A:ASP297
|
4.9
|
131.1
|
1.0
|
CA
|
A:ASP300
|
4.9
|
118.9
|
1.0
|
HA
|
A:ASP301
|
4.9
|
112.0
|
1.0
|
HB3
|
A:ASN295
|
4.9
|
128.8
|
1.0
|
CD2
|
A:LEU328
|
4.9
|
112.5
|
1.0
|
HG22
|
A:VAL294
|
5.0
|
122.8
|
1.0
|
HB3
|
A:LEU299
|
5.0
|
122.7
|
1.0
|
|
Calcium binding site 3 out
of 7 in 9b9k
Go back to
Calcium Binding Sites List in 9b9k
Calcium binding site 3 out
of 7 in the Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_03.jpg) Mono view
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1103
b:117.1
occ:1.00
|
OD1
|
A:ASP362
|
2.3
|
117.2
|
1.0
|
OD1
|
A:ASP360
|
2.3
|
122.2
|
1.0
|
OD1
|
A:ASP364
|
2.3
|
121.1
|
1.0
|
OD2
|
A:ASP368
|
2.4
|
110.8
|
1.0
|
O
|
A:TYR366
|
2.4
|
115.5
|
1.0
|
OD1
|
A:ASP368
|
2.5
|
111.2
|
1.0
|
OD2
|
A:ASP364
|
2.6
|
121.7
|
1.0
|
CG
|
A:ASP364
|
2.6
|
121.3
|
1.0
|
CG
|
A:ASP368
|
2.9
|
110.5
|
1.0
|
H
|
A:ASP364
|
3.0
|
120.3
|
1.0
|
H
|
A:ASP362
|
3.1
|
116.2
|
1.0
|
HA
|
A:ASP360
|
3.2
|
121.8
|
1.0
|
CG
|
A:ASP360
|
3.4
|
122.6
|
1.0
|
H
|
A:TYR366
|
3.4
|
114.8
|
1.0
|
H
|
A:LEU361
|
3.4
|
106.2
|
1.0
|
CG
|
A:ASP362
|
3.5
|
117.1
|
1.0
|
C
|
A:TYR366
|
3.6
|
115.3
|
1.0
|
H
|
A:GLY389
|
3.8
|
118.9
|
1.0
|
HB2
|
A:TYR366
|
3.8
|
115.1
|
1.0
|
CB
|
A:ASP364
|
3.9
|
120.7
|
1.0
|
CA
|
A:ASP360
|
4.0
|
121.8
|
1.0
|
N
|
A:LEU361
|
4.0
|
106.2
|
1.0
|
N
|
A:ASP364
|
4.0
|
120.3
|
1.0
|
OD2
|
A:ASP362
|
4.0
|
117.9
|
1.0
|
HB3
|
A:ASP364
|
4.0
|
120.7
|
1.0
|
N
|
A:ASP362
|
4.1
|
116.2
|
1.0
|
H
|
A:ASP368
|
4.1
|
109.3
|
1.0
|
C
|
A:ASP360
|
4.1
|
121.2
|
1.0
|
N
|
A:TYR366
|
4.2
|
114.8
|
1.0
|
OD2
|
A:ASP360
|
4.2
|
123.2
|
1.0
|
H
|
A:GLN363
|
4.2
|
114.4
|
1.0
|
CB
|
A:ASP360
|
4.2
|
122.4
|
1.0
|
H
|
A:GLY365
|
4.2
|
114.6
|
1.0
|
N
|
A:ASP368
|
4.3
|
109.3
|
1.0
|
CA
|
A:TYR366
|
4.3
|
115.0
|
1.0
|
CB
|
A:ASP368
|
4.3
|
108.9
|
1.0
|
HA
|
A:ASN367
|
4.4
|
113.0
|
1.0
|
CA
|
A:ASP364
|
4.4
|
120.4
|
1.0
|
HB3
|
A:LEU361
|
4.4
|
105.4
|
1.0
|
N
|
A:GLN363
|
4.5
|
114.4
|
1.0
|
CB
|
A:TYR366
|
4.6
|
115.1
|
1.0
|
HB2
|
A:ASP360
|
4.6
|
122.4
|
1.0
|
N
|
A:ASN367
|
4.6
|
113.5
|
1.0
|
C
|
A:ASN367
|
4.6
|
112.7
|
1.0
|
CB
|
A:ASP362
|
4.6
|
116.2
|
1.0
|
HA3
|
A:GLY389
|
4.6
|
119.7
|
1.0
|
N
|
A:GLY389
|
4.7
|
118.9
|
1.0
|
CA
|
A:ASP362
|
4.7
|
116.3
|
1.0
|
HB2
|
A:ASP364
|
4.7
|
120.7
|
1.0
|
HD2
|
A:TYR366
|
4.8
|
115.6
|
1.0
|
C
|
A:ASP362
|
4.8
|
116.7
|
1.0
|
HB2
|
A:ASP368
|
4.8
|
108.9
|
1.0
|
CA
|
A:ASN367
|
4.8
|
113.0
|
1.0
|
N
|
A:GLY365
|
4.8
|
114.6
|
1.0
|
CA
|
A:ASP368
|
4.8
|
108.6
|
1.0
|
HA
|
A:PRO388
|
4.9
|
99.0
|
1.0
|
O
|
A:ASP360
|
4.9
|
121.7
|
1.0
|
CA
|
A:LEU361
|
4.9
|
106.0
|
1.0
|
C
|
A:ASP364
|
5.0
|
120.5
|
1.0
|
HB3
|
A:ASP368
|
5.0
|
108.9
|
1.0
|
HA
|
A:ASP368
|
5.0
|
108.6
|
1.0
|
|
Calcium binding site 4 out
of 7 in 9b9k
Go back to
Calcium Binding Sites List in 9b9k
Calcium binding site 4 out
of 7 in the Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_04.jpg) Mono view
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1104
b:112.9
occ:1.00
|
OD1
|
A:ASP432
|
2.3
|
91.4
|
1.0
|
OD1
|
A:ASN428
|
2.3
|
107.6
|
1.0
|
OD1
|
A:ASP426
|
2.3
|
112.5
|
1.0
|
O
|
A:TYR430
|
2.4
|
96.8
|
1.0
|
OD1
|
A:ASP424
|
2.5
|
109.5
|
1.0
|
OD2
|
A:ASP432
|
2.5
|
91.4
|
1.0
|
CG
|
A:ASP432
|
2.8
|
90.2
|
1.0
|
CG
|
A:ASN428
|
3.3
|
107.8
|
1.0
|
H
|
A:ASN428
|
3.4
|
109.2
|
1.0
|
CG
|
A:ASP426
|
3.4
|
111.9
|
1.0
|
H
|
A:TYR430
|
3.4
|
99.0
|
1.0
|
H
|
A:ASP426
|
3.4
|
110.5
|
1.0
|
CG
|
A:ASP424
|
3.5
|
110.1
|
1.0
|
C
|
A:TYR430
|
3.6
|
96.2
|
1.0
|
H
|
A:GLY448
|
3.6
|
89.3
|
1.0
|
H
|
A:LEU425
|
3.7
|
103.6
|
1.0
|
HD22
|
A:ASN428
|
3.7
|
106.7
|
1.0
|
HA
|
A:ASP424
|
3.8
|
109.2
|
1.0
|
HB2
|
A:TYR430
|
3.8
|
97.0
|
1.0
|
H
|
A:GLY427
|
3.8
|
118.9
|
1.0
|
OD2
|
A:ASP426
|
3.8
|
111.3
|
1.0
|
ND2
|
A:ASN428
|
3.9
|
106.7
|
1.0
|
OD2
|
A:ASP424
|
4.1
|
110.2
|
1.0
|
HB3
|
A:ARG447
|
4.2
|
91.1
|
1.0
|
N
|
A:TYR430
|
4.2
|
99.0
|
1.0
|
N
|
A:ASN428
|
4.2
|
109.2
|
1.0
|
CB
|
A:ASP432
|
4.3
|
88.1
|
1.0
|
CB
|
A:ASN428
|
4.3
|
108.6
|
1.0
|
N
|
A:ASP426
|
4.3
|
110.5
|
1.0
|
CA
|
A:TYR430
|
4.3
|
97.4
|
1.0
|
O
|
A:GLY448
|
4.3
|
90.4
|
1.0
|
C
|
A:PRO431
|
4.4
|
89.7
|
1.0
|
HB3
|
A:ASN428
|
4.4
|
108.6
|
1.0
|
CB
|
A:ASP424
|
4.4
|
109.9
|
1.0
|
N
|
A:GLY448
|
4.4
|
89.3
|
1.0
|
O
|
A:PRO431
|
4.5
|
90.8
|
1.0
|
N
|
A:LEU425
|
4.5
|
103.6
|
1.0
|
CA
|
A:ASP424
|
4.5
|
109.2
|
1.0
|
H
|
A:GLY429
|
4.5
|
107.0
|
1.0
|
N
|
A:GLY427
|
4.5
|
118.9
|
1.0
|
CB
|
A:TYR430
|
4.5
|
97.0
|
1.0
|
HA
|
A:ARG447
|
4.5
|
90.8
|
1.0
|
HG2
|
A:ARG447
|
4.6
|
91.7
|
1.0
|
N
|
A:ASP432
|
4.6
|
89.1
|
1.0
|
N
|
A:PRO431
|
4.6
|
89.1
|
1.0
|
CB
|
A:ASP426
|
4.6
|
112.2
|
1.0
|
HA
|
A:PRO431
|
4.6
|
89.3
|
1.0
|
HB2
|
A:ASP424
|
4.7
|
109.9
|
1.0
|
CA
|
A:ASN428
|
4.7
|
108.5
|
1.0
|
HB2
|
A:ASP432
|
4.7
|
88.1
|
1.0
|
HA3
|
A:GLY448
|
4.8
|
89.1
|
1.0
|
CA
|
A:PRO431
|
4.8
|
89.3
|
1.0
|
C
|
A:ASP424
|
4.8
|
109.5
|
1.0
|
HE
|
A:ARG447
|
4.8
|
92.7
|
1.0
|
CA
|
A:ASP426
|
4.8
|
111.8
|
1.0
|
HD21
|
A:ASN428
|
4.8
|
106.7
|
1.0
|
HB3
|
A:TYR430
|
4.9
|
97.0
|
1.0
|
N
|
A:GLY429
|
4.9
|
107.0
|
1.0
|
HB3
|
A:ASP432
|
4.9
|
88.1
|
1.0
|
CA
|
A:ASP432
|
4.9
|
87.9
|
1.0
|
H
|
A:ASP432
|
5.0
|
89.1
|
1.0
|
HA
|
A:ASP432
|
5.0
|
87.9
|
1.0
|
C
|
A:ASN428
|
5.0
|
108.0
|
1.0
|
|
Calcium binding site 5 out
of 7 in 9b9k
Go back to
Calcium Binding Sites List in 9b9k
Calcium binding site 5 out
of 7 in the Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_05.jpg) Mono view
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca801
b:127.4
occ:1.00
|
OD1
|
B:ASP137
|
2.3
|
133.6
|
1.0
|
OD1
|
B:ASP138
|
2.4
|
133.1
|
1.0
|
O
|
B:SER134
|
2.5
|
123.2
|
1.0
|
O
|
B:ALA342
|
2.7
|
128.0
|
1.0
|
CG
|
B:ASP137
|
3.3
|
127.5
|
1.0
|
HA
|
B:MET135
|
3.4
|
111.7
|
1.0
|
OD2
|
B:ASP137
|
3.5
|
122.7
|
1.0
|
H
|
B:ASP138
|
3.5
|
124.3
|
1.0
|
CG
|
B:ASP138
|
3.5
|
126.2
|
1.0
|
C
|
B:SER134
|
3.7
|
121.3
|
1.0
|
C
|
B:ALA342
|
3.8
|
123.1
|
1.0
|
HA
|
B:ASN343
|
3.9
|
115.5
|
1.0
|
H
|
B:ASP137
|
4.1
|
121.7
|
1.0
|
OD2
|
B:ASP138
|
4.2
|
126.8
|
1.0
|
CA
|
B:MET135
|
4.2
|
111.7
|
1.0
|
HB2
|
B:ALA342
|
4.3
|
119.3
|
1.0
|
N
|
B:ASP138
|
4.4
|
124.3
|
1.0
|
N
|
B:MET135
|
4.4
|
112.2
|
1.0
|
HA
|
B:ALA342
|
4.5
|
121.9
|
1.0
|
HB2
|
B:SER134
|
4.5
|
119.0
|
1.0
|
OD2
|
B:ASP259
|
4.6
|
124.7
|
1.0
|
CA
|
B:ALA342
|
4.7
|
121.9
|
1.0
|
CB
|
B:ASP137
|
4.7
|
121.1
|
1.0
|
CB
|
B:ASP138
|
4.7
|
120.8
|
1.0
|
N
|
B:ASN343
|
4.7
|
120.0
|
1.0
|
C
|
B:MET135
|
4.7
|
115.7
|
1.0
|
CA
|
B:ASN343
|
4.7
|
115.5
|
1.0
|
HA
|
B:SER134
|
4.8
|
122.1
|
1.0
|
HB2
|
B:ASP138
|
4.8
|
120.8
|
1.0
|
CA
|
B:SER134
|
4.8
|
122.1
|
1.0
|
N
|
B:ASP137
|
4.8
|
121.7
|
1.0
|
H
|
B:LYS136
|
4.8
|
112.8
|
1.0
|
CB
|
B:ALA342
|
5.0
|
119.3
|
1.0
|
HB3
|
B:ASN343
|
5.0
|
117.3
|
1.0
|
N
|
B:LYS136
|
5.0
|
112.8
|
1.0
|
|
Calcium binding site 6 out
of 7 in 9b9k
Go back to
Calcium Binding Sites List in 9b9k
Calcium binding site 6 out
of 7 in the Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_06.jpg) Mono view
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca802
b:125.2
occ:1.00
|
OD1
|
B:ASN224
|
2.3
|
116.7
|
1.0
|
OE1
|
B:GLU229
|
2.3
|
125.7
|
1.0
|
OE2
|
B:GLU169
|
2.3
|
102.8
|
1.0
|
O
|
B:PRO228
|
2.3
|
107.6
|
1.0
|
OD1
|
B:ASP226
|
2.3
|
124.6
|
1.0
|
O
|
B:ASP226
|
2.4
|
109.3
|
1.0
|
HA
|
B:GLU229
|
2.7
|
114.2
|
1.0
|
HE2
|
B:HIS263
|
3.0
|
103.6
|
1.0
|
C
|
B:PRO228
|
3.3
|
103.1
|
1.0
|
C
|
B:ASP226
|
3.4
|
110.1
|
1.0
|
CD
|
B:GLU169
|
3.4
|
103.2
|
1.0
|
CD
|
B:GLU229
|
3.4
|
123.1
|
1.0
|
HG2
|
B:GLU169
|
3.5
|
99.5
|
1.0
|
CG
|
B:ASN224
|
3.5
|
113.4
|
1.0
|
CG
|
B:ASP226
|
3.5
|
116.3
|
1.0
|
CA
|
B:GLU229
|
3.7
|
114.2
|
1.0
|
HB2
|
B:GLU169
|
3.8
|
97.6
|
1.0
|
NE2
|
B:HIS263
|
3.8
|
103.6
|
1.0
|
H
|
B:ASP226
|
3.8
|
108.6
|
1.0
|
HD2
|
B:HIS263
|
3.9
|
95.5
|
1.0
|
CG
|
B:GLU169
|
3.9
|
99.5
|
1.0
|
N
|
B:GLU229
|
3.9
|
111.0
|
1.0
|
CA
|
B:ASP226
|
4.0
|
109.7
|
1.0
|
N
|
B:ASP226
|
4.1
|
108.6
|
1.0
|
HD22
|
B:ASN224
|
4.1
|
106.1
|
1.0
|
O
|
B:SER227
|
4.1
|
119.5
|
1.0
|
HB3
|
B:ASN224
|
4.1
|
106.7
|
1.0
|
C
|
B:SER227
|
4.2
|
113.8
|
1.0
|
OE2
|
B:GLU229
|
4.2
|
122.0
|
1.0
|
CD2
|
B:HIS263
|
4.2
|
95.5
|
1.0
|
ND2
|
B:ASN224
|
4.3
|
106.1
|
1.0
|
HB3
|
B:TYR175
|
4.3
|
94.0
|
1.0
|
CB
|
B:ASP226
|
4.3
|
110.8
|
1.0
|
N
|
B:PRO228
|
4.3
|
103.9
|
1.0
|
N
|
B:SER227
|
4.3
|
106.8
|
1.0
|
CB
|
B:GLU229
|
4.4
|
109.5
|
1.0
|
CG
|
B:GLU229
|
4.4
|
117.4
|
1.0
|
CB
|
B:ASN224
|
4.4
|
106.7
|
1.0
|
OD2
|
B:ASP226
|
4.4
|
110.0
|
1.0
|
H
|
B:GLY230
|
4.4
|
110.5
|
1.0
|
CA
|
B:PRO228
|
4.5
|
100.9
|
1.0
|
HB3
|
B:GLU229
|
4.5
|
109.5
|
1.0
|
CB
|
B:GLU169
|
4.5
|
97.6
|
1.0
|
OE1
|
B:GLU169
|
4.5
|
103.6
|
1.0
|
HG2
|
B:PRO228
|
4.6
|
103.0
|
1.0
|
C
|
B:GLU229
|
4.7
|
117.6
|
1.0
|
HG2
|
B:GLU229
|
4.7
|
117.4
|
1.0
|
CA
|
B:SER227
|
4.7
|
108.9
|
1.0
|
HD2
|
B:PRO228
|
4.7
|
105.6
|
1.0
|
HA
|
B:SER227
|
4.8
|
108.9
|
1.0
|
O
|
B:TYR175
|
4.8
|
107.0
|
1.0
|
H
|
B:LEU225
|
4.8
|
102.6
|
1.0
|
HB2
|
B:ASP226
|
4.8
|
110.8
|
1.0
|
N
|
B:GLY230
|
4.9
|
110.5
|
1.0
|
HG3
|
B:GLU169
|
4.9
|
99.5
|
1.0
|
H
|
B:GLU229
|
4.9
|
111.0
|
1.0
|
C
|
B:LEU225
|
4.9
|
107.8
|
1.0
|
HB2
|
B:ASN224
|
5.0
|
106.7
|
1.0
|
CD
|
B:PRO228
|
5.0
|
105.6
|
1.0
|
|
Calcium binding site 7 out
of 7 in 9b9k
Go back to
Calcium Binding Sites List in 9b9k
Calcium binding site 7 out
of 7 in the Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_07.jpg) Mono view
![](/pictures/CA/pdb/b9/9b9k-CA-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Integrin Alpha-5 Beta-1 in Complex with MINT1526A Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca803
b:50.0
occ:1.00
|
OG
|
B:SER134
|
3.1
|
119.2
|
1.0
|
OD1
|
B:ASP259
|
3.2
|
124.9
|
1.0
|
OE2
|
B:GLU229
|
3.2
|
122.0
|
1.0
|
HB1
|
B:ALA260
|
3.3
|
108.3
|
1.0
|
HG
|
B:SER134
|
3.4
|
119.2
|
1.0
|
HB2
|
B:SER132
|
3.5
|
101.6
|
1.0
|
HB3
|
B:SER132
|
3.8
|
101.6
|
1.0
|
CB
|
B:SER132
|
4.1
|
101.6
|
1.0
|
CG
|
B:ASP259
|
4.2
|
126.0
|
1.0
|
HB3
|
B:SER134
|
4.2
|
119.0
|
1.0
|
CB
|
B:SER134
|
4.3
|
119.0
|
1.0
|
CD
|
B:GLU229
|
4.3
|
123.1
|
1.0
|
CB
|
B:ALA260
|
4.3
|
108.3
|
1.0
|
H
|
B:SER134
|
4.3
|
119.3
|
1.0
|
HG3
|
B:GLU229
|
4.4
|
117.4
|
1.0
|
HB2
|
B:ALA260
|
4.5
|
108.3
|
1.0
|
OD2
|
B:ASP259
|
4.5
|
124.7
|
1.0
|
OG
|
B:SER132
|
4.6
|
110.2
|
1.0
|
O
|
B:SER227
|
4.6
|
119.5
|
1.0
|
HG2
|
B:GLU229
|
4.7
|
117.4
|
1.0
|
CG
|
B:GLU229
|
4.8
|
117.4
|
1.0
|
OD2
|
B:ASP130
|
4.8
|
117.1
|
1.0
|
HB3
|
B:ALA260
|
4.8
|
108.3
|
1.0
|
HG
|
B:SER132
|
4.8
|
110.2
|
1.0
|
HB2
|
B:SER134
|
4.9
|
119.0
|
1.0
|
O
|
B:ASP259
|
4.9
|
125.6
|
1.0
|
HA
|
B:SER227
|
4.9
|
108.9
|
1.0
|
|
Reference:
A.Nguyen,
J.B.Heim,
G.Cordara,
M.C.Chan,
H.Johannesen,
C.Charlesworth,
M.Li,
C.M.Azumaya,
B.Madden,
U.Krengel,
A.Meves,
M.G.Campbell.
Structural and Functional Characterization of Integrin Alpha 5-Targeting Antibodies For Anti-Angiogenic Therapy. Biorxiv 2025.
ISSN: ISSN 2692-8205
PubMed: 39829743
DOI: 10.1101/2025.01.08.631572
Page generated: Sun Feb 9 06:18:25 2025
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