Calcium in PDB 9bab: Cryo-Em of HYPER2 Tube, ~27 Nm Diameter

The binding sites of Calcium atom in the Cryo-Em of HYPER2 Tube, ~27 Nm Diameter (pdb code 9bab). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Cryo-Em of HYPER2 Tube, ~27 Nm Diameter, PDB code: 9bab:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Cryo-Em of HYPER2 Tube, ~27 Nm Diameter


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em of HYPER2 Tube, ~27 Nm Diameter within 5.0Å range: probe atom residue distance (Å) B Occ z:Ca201 b:70.0 occ:1.00 OD2 z:ASP108 2.4 74.2 1.0 OD1 z:ASP108 2.8 74.2 1.0 CG z:ASP108 2.8 74.2 1.0 OE1 z:GLU110 3.4 76.0 1.0 OE2 z:GLU111 3.5 75.8 1.0 CD z:GLU111 4.0 75.8 1.0 CG z:GLU111 4.0 75.8 1.0 NE2 z:GLN91 4.1 71.8 1.0 CB z:ASP108 4.2 74.2 1.0 CD z:GLU110 4.6 76.0 1.0 CB z:GLU110 4.7 76.0 1.0 OE1 z:GLU111 5.0 75.8 1.0

Calcium binding site 2 out of 3 in the Cryo-Em of HYPER2 Tube, ~27 Nm Diameter


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em of HYPER2 Tube, ~27 Nm Diameter within 5.0Å range: probe atom residue distance (Å) B Occ z:Ca202 b:58.1 occ:1.00 OD1 z:ASP58 2.5 67.5 1.0 O z:ASP58 2.9 67.5 1.0 O z:GLY147 3.1 67.5 1.0 CG z:ASP58 3.4 67.5 1.0 OD2 z:ASP58 3.8 67.5 1.0 C z:ASP58 3.9 67.5 1.0 C z:GLY147 4.2 67.5 1.0 OXT z:GLY147 4.5 67.5 1.0 CA z:ASP58 4.6 67.5 1.0 CB z:ASP58 4.6 67.5 1.0 N z:VAL59 4.8 67.3 1.0 OE1 z:GLU60 4.9 70.8 1.0 CA z:VAL59 4.9 67.3 1.0

Calcium binding site 3 out of 3 in the Cryo-Em of HYPER2 Tube, ~27 Nm Diameter


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em of HYPER2 Tube, ~27 Nm Diameter within 5.0Å range: probe atom residue distance (Å) B Occ z:Ca203 b:57.6 occ:1.00 O z:THR146 2.4 66.2 1.0 C z:THR146 3.6 66.2 1.0 N z:THR146 4.1 66.2 1.0 CA z:THR146 4.5 66.2 1.0 N z:GLY147 4.5 67.5 1.0 CA z:GLY147 4.6 67.5 1.0 CG2 z:THR146 4.7 66.2 1.0

R.R.Sonani, E.H.Egelman. Cryo-Em of HYPER2 Tube, ~27 Nm Diameter To Be Published.