Calcium in PDB 9bac: Cryo-Em of HYPER2 Tube, ~24 Nm Diameter

The binding sites of Calcium atom in the Cryo-Em of HYPER2 Tube, ~24 Nm Diameter (pdb code 9bac). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Cryo-Em of HYPER2 Tube, ~24 Nm Diameter, PDB code: 9bac:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Cryo-Em of HYPER2 Tube, ~24 Nm Diameter


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em of HYPER2 Tube, ~24 Nm Diameter within 5.0Å range: probe atom residue distance (Å) B Occ z:Ca201 b:96.8 occ:1.00 OD2 z:ASP108 2.5 82.3 1.0 OD1 z:ASP108 2.5 82.3 1.0 CG z:ASP108 2.8 82.3 1.0 OE2 z:GLU111 2.9 82.3 1.0 CD z:GLU111 3.5 82.3 1.0 CG z:GLU111 3.8 82.3 1.0 OE1 z:GLU111 4.3 82.3 1.0 NE2 z:GLN91 4.3 72.1 1.0 CB z:ASP108 4.3 82.3 1.0 NZ z:LYS93 4.4 68.0 1.0 OE1 z:GLU110 4.6 87.3 1.0 OE1 z:GLN91 4.9 72.1 1.0 N z:ASP108 5.0 82.3 1.0

Calcium binding site 2 out of 3 in the Cryo-Em of HYPER2 Tube, ~24 Nm Diameter


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em of HYPER2 Tube, ~24 Nm Diameter within 5.0Å range: probe atom residue distance (Å) B Occ z:Ca202 b:62.0 occ:1.00 OD1 z:ASP58 2.4 71.6 1.0 OD2 z:ASP58 2.8 71.6 1.0 CG z:ASP58 2.9 71.6 1.0 O z:GLY147 3.1 68.0 1.0 O z:ASP58 3.2 71.6 1.0 OXT z:GLY147 3.7 68.0 1.0 C z:GLY147 3.9 68.0 1.0 C z:ASP58 3.9 71.6 1.0 CB z:ASP58 4.3 71.6 1.0 CD z:GLU60 4.5 76.0 1.0 OE1 z:GLU60 4.5 76.0 1.0 CA z:ASP58 4.6 71.6 1.0 N z:VAL59 4.6 72.2 1.0 CA z:VAL59 4.7 72.2 1.0 OE2 z:GLU60 4.7 76.0 1.0 CG z:GLU60 4.8 76.0 1.0 N z:GLU60 4.9 76.0 1.0

Calcium binding site 3 out of 3 in the Cryo-Em of HYPER2 Tube, ~24 Nm Diameter


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em of HYPER2 Tube, ~24 Nm Diameter within 5.0Å range: probe atom residue distance (Å) B Occ z:Ca203 b:96.8 occ:1.00 O z:THR146 2.4 62.2 1.0 C z:THR146 3.7 62.2 1.0 N z:THR146 4.3 62.2 1.0 CA z:GLY147 4.5 68.0 1.0 N z:GLY147 4.5 68.0 1.0 CA z:THR146 4.6 62.2 1.0 CG2 z:THR146 4.9 62.2 1.0

R.R.Sonani, E.H.Egelman. Cryo-Em of HYPER2 Tube, ~24 Nm Diameter To Be Published.