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Calcium in PDB 9bcz: Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine

Enzymatic activity of Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine

All present enzymatic activity of Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine:
3.1.4.11;

Protein crystallography data

The structure of Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine, PDB code: 9bcz was solved by M.M.Edwards, A.Dong, N.Theo-Emegano, A.Seitova, P.Loppnau, R.Leung, H.Li, O.Ilyassov, A.M.Edwards, C.H.Arrowsmith, Structural Genomicsconsortium, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.59 / 1.99
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 122.182, 85.539, 98.433, 90, 112.04, 90
R / Rfree (%) 17.3 / 20.4

Other elements in 9bcz:

The structure of Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine (pdb code 9bcz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine, PDB code: 9bcz:

Calcium binding site 1 out of 1 in 9bcz

Go back to Calcium Binding Sites List in 9bcz
Calcium binding site 1 out of 1 in the Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca705

b:21.0
occ:1.00
 O3P A:TPO331 2.3 32.6 1.0
OE2 A:GLU251 2.4 24.6 1.0
OE1 A:GLU202 2.4 21.4 1.0
OD1 A:ASN173 2.4 16.8 1.0
OD2 A:ASP204 2.4 22.4 1.0
OD1 A:ASP204 2.4 19.6 1.0
CG A:ASP204 2.8 20.5 1.0
CD A:GLU251 3.2 31.2 1.0
CD A:GLU202 3.3 27.4 1.0
CG A:ASN173 3.4 19.3 1.0
OE1 A:GLU251 3.6 33.9 1.0
P A:TPO331 3.8 42.8 1.0
ND2 A:ASN173 3.8 19.6 1.0
UNK A:UNX712 4.1 23.8 1.0
OE2 A:GLU202 4.1 29.1 1.0
CG A:GLU202 4.1 24.7 1.0
CB A:ASP204 4.3 20.7 1.0
OG1 A:TPO331 4.3 32.5 1.0
CG A:GLU251 4.3 27.2 1.0
CB A:GLU251 4.4 23.6 1.0
OH A:TYR175 4.4 17.5 1.0
O2P A:TPO331 4.5 48.0 1.0
O A:HOH854 4.6 19.3 1.0
NE2 A:HIS172 4.7 23.4 1.0
O1P A:TPO331 4.8 42.3 1.0
CB A:ASN173 4.8 18.6 1.0
CE1 A:TYR175 5.0 18.6 1.0

Reference:

M.M.Edwards, A.Dong, N.Theo-Emegano, A.Seitova, P.Loppnau, R.Leung, H.Li, O.Ilyassov, A.M.Edwards, C.H.Arrowsmith, Structural Genomics Consortium. Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine To Be Published.
Page generated: Thu Jul 10 09:00:03 2025

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