Calcium in PDB 9c0n: Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature

Enzymatic activity of Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature

All present enzymatic activity of Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature:
3.1.1.1;

Protein crystallography data

The structure of Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature, PDB code: 9c0n was solved by M.Fellner, G.T.Randall, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.06 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.656, 61.736, 77.177, 90, 90, 90
R / Rfree (%) 14.9 / 17

Calcium Binding Sites:

The binding sites of Calcium atom in the Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature (pdb code 9c0n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature, PDB code: 9c0n:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 9c0n

Go back to Calcium Binding Sites List in 9c0n
Calcium binding site 1 out of 4 in the Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:29.9
occ:0.57
 O A:HOH479 2.2 30.2 1.0
OD1 A:ASN40 2.4 26.3 1.0
OD1 A:ASP41 2.5 43.9 1.0
CG A:ASN40 3.5 26.5 1.0
CG A:ASP41 3.6 40.5 1.0
HB3 A:ASN40 3.8 27.6 1.0
HA A:ASP41 3.8 36.7 1.0
CB A:ASN40 4.2 23.0 1.0
N A:ASP41 4.2 27.4 1.0
OD2 A:ASP41 4.3 46.9 1.0
HD22 A:LEU11 4.4 43.4 1.0
C A:ASN40 4.4 28.5 1.0
H A:ASP41 4.4 32.9 1.0
CA A:ASP41 4.4 30.5 1.0
O A:ASN40 4.6 28.6 1.0
O A:ALA37 4.6 25.1 1.0
ND2 A:ASN40 4.6 27.3 1.0
HD21 A:ASN40 4.6 32.8 1.0
CB A:ASP41 4.6 30.0 1.0
CA A:ASN40 5.0 23.5 1.0
HB2 A:ASN40 5.0 27.6 1.0

Calcium binding site 2 out of 4 in 9c0n

Go back to Calcium Binding Sites List in 9c0n
Calcium binding site 2 out of 4 in the Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:35.1
occ:0.65
 O A:HOH512 2.2 55.9 1.0
O A:HOH416 2.4 47.6 1.0
OE2 A:GLU38 2.5 43.6 1.0
O A:HOH477 2.5 40.4 1.0
OE1 A:GLU38 2.6 35.8 1.0
CD A:GLU38 2.9 36.5 1.0
CG A:GLU38 4.4 28.5 1.0
O A:HOH454 4.5 38.1 1.0
HG3 A:GLU38 4.7 34.2 1.0
HG2 A:GLU38 4.8 34.2 1.0
O A:HOH458 4.8 44.5 1.0
HA A:GLU38 4.9 30.0 1.0

Calcium binding site 3 out of 4 in 9c0n

Go back to Calcium Binding Sites List in 9c0n
Calcium binding site 3 out of 4 in the Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:45.0
occ:0.63
 O A:HOH447 2.3 53.3 1.0
OE2 A:GLU196 2.5 50.6 1.0
OE1 A:GLU196 2.6 40.0 1.0
CD A:GLU196 2.9 48.3 1.0
O A:HOH403 3.8 43.7 1.0
O A:HOH511 3.9 60.0 1.0
CG A:GLU196 4.4 33.3 1.0
HG2 A:GLU196 4.7 40.0 1.0
HG3 A:GLU196 4.8 40.0 1.0

Calcium binding site 4 out of 4 in 9c0n

Go back to Calcium Binding Sites List in 9c0n
Calcium binding site 4 out of 4 in the Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Fphi, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases I, Apo Form at Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca304

b:79.1
occ:0.99
 OE1 A:GLU161 2.3 44.1 0.5
OE2 A:GLU161 2.5 56.9 0.5
O A:HOH501 2.6 65.0 1.0
O A:ASP157 2.6 56.9 1.0
O A:HOH506 2.8 63.4 1.0
CD A:GLU161 2.8 45.0 0.5
HG2 A:GLU161 3.2 53.5 0.5
O A:HOH514 3.3 65.1 1.0
O A:HOH436 3.4 58.5 1.0
HA A:TYR158 3.5 65.1 1.0
C A:ASP157 3.8 63.4 1.0
CG A:GLU161 4.1 44.5 0.5
HG3 A:GLU161 4.1 53.5 0.5
HB3 A:ASP157 4.2 77.2 1.0
CG A:GLU161 4.3 44.8 0.5
H A:GLU161 4.3 53.5 0.5
CA A:TYR158 4.3 54.2 1.0
H A:GLU161 4.3 53.5 0.5
HD1 A:TYR158 4.4 57.4 1.0
OE2 A:GLU161 4.5 56.9 0.5
HG3 A:GLU161 4.5 53.8 0.5
H A:GLY160 4.5 58.5 1.0
N A:TYR158 4.5 53.7 1.0
HG2 A:GLU161 4.7 53.8 0.5
HB2 A:GLU161 4.8 53.0 0.5
C A:TYR158 4.8 50.4 1.0
CD A:GLU161 4.8 46.1 0.5
CA A:ASP157 4.9 60.9 1.0
HB2 A:GLU161 4.9 53.0 0.5
HA3 A:GLY160 5.0 54.3 1.0
CB A:ASP157 5.0 64.3 1.0
N A:GLU161 5.0 44.5 0.5
N A:GLU161 5.0 44.5 0.5

Reference:

M.Fellner, G.Randall, I.R.C.G.Bitac, A.K.Warrender, A.Sethi, R.Jelinek, I.Kass. Similar But Distinct-Biochemical Characterization of the Staphylococcus Aureus Serine Hydrolases Fphh and Fphi. Proteins 2024.
ISSN: ESSN 1097-0134
PubMed: 39726198
DOI: 10.1002/PROT.26785
Page generated: Sat Feb 8 16:20:11 2025

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy