Calcium in PDB 9ctt: BEST1 + Gaba Closed State

The binding sites of Calcium atom in the BEST1 + Gaba Closed State (pdb code 9ctt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the BEST1 + Gaba Closed State, PDB code: 9ctt:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the BEST1 + Gaba Closed State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of BEST1 + Gaba Closed State within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca601 b:45.2 occ:1.00 O D:ASN296 2.3 47.0 1.0 OD2 D:ASP301 2.4 56.7 1.0 OD2 D:ASP304 2.5 54.6 1.0 O E:ALA10 2.6 50.5 1.0 O D:GLN293 2.8 54.9 1.0 OD1 D:ASP304 2.8 58.4 1.0 CG D:ASP304 3.0 52.9 1.0 C D:ASN296 3.4 43.4 1.0 CG D:ASP301 3.5 57.0 1.0 C E:ALA10 3.7 49.0 1.0 C D:GLN293 3.8 45.8 1.0 CB D:ASP301 4.0 52.6 1.0 N D:GLY299 4.2 44.2 1.0 CA D:ASN296 4.3 39.4 1.0 N D:PRO297 4.3 39.6 1.0 CA D:GLN293 4.3 43.3 1.0 CA D:PRO297 4.3 36.8 1.0 CA D:GLY299 4.3 46.5 1.0 CA E:ASN11 4.3 50.8 1.0 N D:ASN296 4.4 49.8 1.0 CB D:ASN296 4.4 38.5 1.0 N E:ASN11 4.5 58.0 1.0 OD1 D:ASP301 4.5 64.4 1.0 CB D:ASP304 4.5 42.8 1.0 O E:VAL9 4.5 54.2 1.0 N D:ASP301 4.6 51.9 1.0 CG D:GLN293 4.7 51.5 1.0 C D:PRO297 4.7 37.2 1.0 O D:GLU292 4.7 57.8 1.0 CA E:ALA10 4.7 47.6 1.0 N D:PHE298 4.9 45.1 1.0 C D:GLY299 4.9 46.7 1.0 C E:ASN11 4.9 50.9 1.0 N E:ALA12 4.9 51.9 1.0 N D:GLU300 4.9 53.1 1.0 CA D:ASP301 5.0 51.1 1.0 N D:LEU294 5.0 44.1 1.0 OD1 E:ASN11 5.0 57.5 1.0

Calcium binding site 2 out of 5 in the BEST1 + Gaba Closed State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of BEST1 + Gaba Closed State within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca601 b:41.7 occ:1.00 O B:ASN296 2.3 48.1 1.0 OD2 B:ASP301 2.4 60.9 1.0 O C:ALA10 2.4 58.2 1.0 OD2 B:ASP304 2.6 50.9 1.0 O B:GLN293 2.7 53.6 1.0 OD1 B:ASP304 3.2 59.5 1.0 CG B:ASP304 3.3 54.3 1.0 C B:ASN296 3.4 43.4 1.0 CG B:ASP301 3.5 61.0 1.0 C C:ALA10 3.6 52.6 1.0 C B:GLN293 3.8 45.5 1.0 CB B:ASP301 4.2 60.0 1.0 CA B:ASN296 4.2 39.8 1.0 CB B:ASN296 4.2 39.0 1.0 CA B:GLN293 4.2 43.9 1.0 N B:GLY299 4.3 46.2 1.0 N B:ASN296 4.3 43.6 1.0 CA C:ASN11 4.3 53.0 1.0 O C:VAL9 4.3 61.1 1.0 N C:ASN11 4.3 59.5 1.0 N B:PRO297 4.4 37.6 1.0 CA B:GLY299 4.4 45.7 1.0 CA B:PRO297 4.5 37.5 1.0 OD1 B:ASP301 4.5 68.9 1.0 CA C:ALA10 4.6 48.7 1.0 O B:GLU292 4.6 55.7 1.0 CG B:GLN293 4.7 51.3 1.0 CB B:ASP304 4.7 47.9 1.0 C C:ASN11 4.8 55.6 1.0 N C:ALA12 4.9 54.6 1.0 N B:ASP301 4.9 59.2 1.0 C B:PRO297 4.9 41.5 1.0 N B:LEU294 4.9 44.1 1.0 N B:PHE298 5.0 44.1 1.0

Calcium binding site 3 out of 5 in the BEST1 + Gaba Closed State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of BEST1 + Gaba Closed State within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca601 b:44.9 occ:1.00 O E:ASN296 2.3 45.9 1.0 OD2 E:ASP301 2.4 55.2 1.0 OD2 E:ASP304 2.4 50.1 1.0 O E:GLN293 2.6 51.5 1.0 O A:ALA10 2.7 47.9 1.0 OD1 E:ASP304 2.8 56.7 1.0 CG E:ASP304 2.9 52.2 1.0 C E:ASN296 3.4 43.0 1.0 CG E:ASP301 3.5 58.0 1.0 C E:GLN293 3.7 43.6 1.0 C A:ALA10 3.8 48.5 1.0 CB E:ASP301 4.0 56.9 1.0 CA E:GLN293 4.2 43.1 1.0 N E:GLY299 4.3 42.0 1.0 N E:PRO297 4.3 39.0 1.0 CA E:PRO297 4.3 36.8 1.0 CA E:ASN296 4.3 37.8 1.0 N E:ASN296 4.4 41.0 1.0 CA E:GLY299 4.4 45.9 1.0 CB E:ASP304 4.4 45.5 1.0 CB E:ASN296 4.5 38.9 1.0 CA A:ASN11 4.5 49.1 1.0 OD1 E:ASP301 4.5 64.3 1.0 N A:ASN11 4.6 55.5 1.0 O A:VAL9 4.6 58.3 1.0 CG E:GLN293 4.6 52.8 1.0 O E:GLU292 4.6 58.0 1.0 N E:ASP301 4.7 51.7 1.0 C E:PRO297 4.7 38.6 1.0 N E:LEU294 4.8 45.4 1.0 CA A:ALA10 4.8 46.9 1.0 N E:PHE298 4.9 43.7 1.0 N A:ALA12 5.0 50.1 1.0 C E:GLY299 5.0 44.8 1.0 CA E:ASP301 5.0 49.0 1.0

Calcium binding site 4 out of 5 in the BEST1 + Gaba Closed State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of BEST1 + Gaba Closed State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:40.2 occ:1.00 O A:ASN296 2.3 52.0 1.0 O B:ALA10 2.5 46.8 1.0 OD2 A:ASP301 2.6 57.5 1.0 O A:GLN293 2.6 56.1 1.0 OD2 A:ASP304 2.8 51.6 1.0 OD1 A:ASP304 2.8 56.7 1.0 CG A:ASP304 3.2 50.4 1.0 C A:ASN296 3.4 44.8 1.0 CG A:ASP301 3.7 59.1 1.0 C B:ALA10 3.7 46.2 1.0 C A:GLN293 3.7 51.0 1.0 CB A:ASP301 4.1 57.1 1.0 CA A:ASN296 4.2 39.6 1.0 CA A:GLN293 4.3 48.6 1.0 N A:PRO297 4.3 35.2 1.0 N A:GLY299 4.3 49.0 1.0 N A:ASN296 4.3 46.8 1.0 CA A:PRO297 4.3 35.0 1.0 CA B:ASN11 4.4 49.3 1.0 CB A:ASN296 4.4 35.8 1.0 N B:ASN11 4.4 55.4 1.0 O B:VAL9 4.5 55.4 1.0 CA A:GLY299 4.5 49.1 1.0 O A:GLU292 4.6 53.8 1.0 CB A:ASP304 4.7 46.9 1.0 CA B:ALA10 4.7 44.2 1.0 CG A:GLN293 4.7 53.1 1.0 OD1 A:ASP301 4.7 66.2 1.0 C A:PRO297 4.8 41.8 1.0 N A:PHE298 4.9 43.8 1.0 N A:LEU294 4.9 45.0 1.0 N A:ASP301 4.9 53.0 1.0 N B:ALA12 4.9 53.8 1.0 C B:ASN11 4.9 52.5 1.0

Calcium binding site 5 out of 5 in the BEST1 + Gaba Closed State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of BEST1 + Gaba Closed State within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca601 b:45.2 occ:1.00 O C:ASN296 2.3 47.9 1.0 OD2 C:ASP301 2.4 60.0 1.0 OD2 C:ASP304 2.5 49.6 1.0 O D:ALA10 2.6 49.5 1.0 O C:GLN293 2.6 50.3 1.0 OD1 C:ASP304 2.9 57.8 1.0 CG C:ASP304 3.0 50.8 1.0 C C:ASN296 3.4 40.9 1.0 CG C:ASP301 3.5 56.0 1.0 C C:GLN293 3.7 46.9 1.0 C D:ALA10 3.8 48.4 1.0 CB C:ASP301 4.0 55.4 1.0 N C:GLY299 4.2 45.1 1.0 CA C:GLN293 4.3 43.4 1.0 N C:PRO297 4.3 37.3 1.0 CA C:PRO297 4.3 34.5 1.0 CA C:ASN296 4.3 40.0 1.0 CA C:GLY299 4.4 41.9 1.0 CA D:ASN11 4.4 49.1 1.0 N C:ASN296 4.4 48.4 1.0 CB C:ASN296 4.4 38.7 1.0 CB C:ASP304 4.5 44.3 1.0 N D:ASN11 4.5 58.1 1.0 OD1 C:ASP301 4.6 64.1 1.0 O D:VAL9 4.6 59.9 1.0 CG C:GLN293 4.7 50.2 1.0 O C:GLU292 4.7 57.5 1.0 C C:PRO297 4.7 38.9 1.0 N C:ASP301 4.7 54.1 1.0 CA D:ALA10 4.8 45.5 1.0 N C:PHE298 4.9 45.1 1.0 N C:LEU294 4.9 46.4 1.0 N D:ALA12 5.0 53.2 1.0 C D:ASN11 5.0 51.0 1.0 OD1 D:ASN11 5.0 59.5 1.0

J.Wang, A.P.Owji, A.Kittredge, Z.Clark, Y.Zhang, T.Yang. GAD65 Tunes the Functions of BEST1 As A Gaba Receptor and A Neurotransmitter Conducting Channel. Nat Commun V. 15 8051 2024.
ISSN: ESSN 2041-1723
PubMed: 39277606
DOI: 10.1038/S41467-024-52039-5