Calcium in PDB 9e9y: Weev Mcmillan Vlp in Complex with Vldlr La(1-2)
Enzymatic activity of Weev Mcmillan Vlp in Complex with Vldlr La(1-2)
All present enzymatic activity of Weev Mcmillan Vlp in Complex with Vldlr La(1-2):
3.4.21.90;
Calcium Binding Sites:
The binding sites of Calcium atom in the Weev Mcmillan Vlp in Complex with Vldlr La(1-2)
(pdb code 9e9y). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Weev Mcmillan Vlp in Complex with Vldlr La(1-2), PDB code: 9e9y:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 9e9y
Go back to
Calcium Binding Sites List in 9e9y
Calcium binding site 1 out
of 8 in the Weev Mcmillan Vlp in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Weev Mcmillan Vlp in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
V:Ca201
b:49.6
occ:1.00
|
OD2
|
V:ASP63
|
2.2
|
58.2
|
1.0
|
|
OD1
|
V:ASP53
|
2.3
|
66.0
|
1.0
|
|
O
|
V:ASP55
|
2.4
|
68.0
|
1.0
|
|
O
|
V:TRP50
|
2.4
|
70.0
|
1.0
|
|
OD2
|
V:ASP57
|
2.4
|
61.9
|
1.0
|
|
OD1
|
V:ASP57
|
2.4
|
61.9
|
1.0
|
|
OD2
|
V:ASP53
|
2.5
|
66.0
|
1.0
|
|
CG
|
V:ASP57
|
2.6
|
61.9
|
1.0
|
|
CG
|
V:ASP53
|
2.7
|
66.0
|
1.0
|
|
NZ
|
G:LYS227
|
3.2
|
110.7
|
1.0
|
|
C
|
V:TRP50
|
3.3
|
70.0
|
1.0
|
|
CG
|
V:ASP63
|
3.4
|
58.2
|
1.0
|
|
C
|
V:ASP55
|
3.4
|
68.0
|
1.0
|
|
CB
|
V:TRP50
|
3.8
|
70.0
|
1.0
|
|
OD1
|
V:ASP63
|
3.8
|
58.2
|
1.0
|
|
N
|
V:ASP57
|
3.9
|
61.9
|
1.0
|
|
CA
|
V:TRP50
|
3.9
|
70.0
|
1.0
|
|
CB
|
V:ASP57
|
4.0
|
61.9
|
1.0
|
|
CB
|
V:ASP53
|
4.1
|
66.0
|
1.0
|
|
N
|
V:ASP55
|
4.1
|
68.0
|
1.0
|
|
N
|
V:LYS51
|
4.2
|
62.9
|
1.0
|
|
CA
|
V:ASP55
|
4.2
|
68.0
|
1.0
|
|
C
|
V:GLU56
|
4.2
|
57.1
|
1.0
|
|
N
|
V:GLU56
|
4.3
|
57.1
|
1.0
|
|
CA
|
V:GLU56
|
4.4
|
57.1
|
1.0
|
|
CA
|
V:ASP57
|
4.5
|
61.9
|
1.0
|
|
N
|
V:ASP53
|
4.5
|
66.0
|
1.0
|
|
CA
|
V:LYS51
|
4.5
|
62.9
|
1.0
|
|
CB
|
V:ASP55
|
4.5
|
68.0
|
1.0
|
|
CB
|
V:ASP63
|
4.6
|
58.2
|
1.0
|
|
CE
|
G:LYS227
|
4.7
|
110.7
|
1.0
|
|
C
|
V:LYS51
|
4.7
|
62.9
|
1.0
|
|
CA
|
V:ASP53
|
4.8
|
66.0
|
1.0
|
|
O
|
V:LYS51
|
4.9
|
62.9
|
1.0
|
|
O
|
V:GLU56
|
4.9
|
57.1
|
1.0
|
|
CG
|
V:TRP50
|
4.9
|
70.0
|
1.0
|
|
N
|
V:GLY54
|
4.9
|
67.2
|
1.0
|
|
Calcium binding site 2 out
of 8 in 9e9y
Go back to
Calcium Binding Sites List in 9e9y
Calcium binding site 2 out
of 8 in the Weev Mcmillan Vlp in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Weev Mcmillan Vlp in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
V:Ca202
b:76.6
occ:1.00
|
OD2
|
V:ASP102
|
2.3
|
82.7
|
1.0
|
|
OD1
|
V:ASP92
|
2.3
|
78.8
|
1.0
|
|
O
|
V:ASP94
|
2.3
|
84.5
|
1.0
|
|
O
|
V:TRP89
|
2.4
|
80.8
|
1.0
|
|
OD2
|
V:ASP96
|
2.4
|
81.0
|
1.0
|
|
OE2
|
V:GLU103
|
2.4
|
92.6
|
1.0
|
|
CG
|
V:ASP92
|
3.0
|
78.8
|
1.0
|
|
CG
|
V:ASP96
|
3.3
|
81.0
|
1.0
|
|
C
|
V:TRP89
|
3.4
|
80.8
|
1.0
|
|
C
|
V:ASP94
|
3.4
|
84.5
|
1.0
|
|
OD2
|
V:ASP92
|
3.5
|
78.8
|
1.0
|
|
CG
|
V:ASP102
|
3.5
|
82.7
|
1.0
|
|
N
|
V:ASP94
|
3.6
|
84.5
|
1.0
|
|
CD
|
V:GLU103
|
3.6
|
92.6
|
1.0
|
|
N
|
V:ASP92
|
3.8
|
78.8
|
1.0
|
|
CB
|
V:ASP92
|
3.9
|
78.8
|
1.0
|
|
CA
|
V:ASP94
|
4.0
|
84.5
|
1.0
|
|
CB
|
V:TRP89
|
4.1
|
80.8
|
1.0
|
|
CB
|
V:ASP96
|
4.1
|
81.0
|
1.0
|
|
OD1
|
V:ASP96
|
4.1
|
81.0
|
1.0
|
|
N
|
V:ASP96
|
4.1
|
81.0
|
1.0
|
|
N
|
V:GLY93
|
4.1
|
87.2
|
1.0
|
|
CA
|
V:TRP89
|
4.2
|
80.8
|
1.0
|
|
OD1
|
V:ASP102
|
4.2
|
82.7
|
1.0
|
|
CG
|
V:GLU103
|
4.2
|
92.6
|
1.0
|
|
CA
|
V:ASP92
|
4.3
|
78.8
|
1.0
|
|
CB
|
V:ASP94
|
4.3
|
84.5
|
1.0
|
|
N
|
V:LYS90
|
4.3
|
89.0
|
1.0
|
|
N
|
V:CYS91
|
4.4
|
90.1
|
1.0
|
|
NZ
|
H:LYS190
|
4.4
|
176.9
|
1.0
|
|
CA
|
V:LYS90
|
4.5
|
89.0
|
1.0
|
|
CB
|
V:ASP102
|
4.5
|
82.7
|
1.0
|
|
N
|
V:PRO95
|
4.6
|
82.8
|
1.0
|
|
C
|
V:ASP92
|
4.6
|
78.8
|
1.0
|
|
O
|
V:ASP102
|
4.6
|
82.7
|
1.0
|
|
OE1
|
V:GLU103
|
4.6
|
92.6
|
1.0
|
|
C
|
V:LYS90
|
4.6
|
89.0
|
1.0
|
|
C
|
V:GLY93
|
4.7
|
87.2
|
1.0
|
|
CA
|
V:ASP96
|
4.8
|
81.0
|
1.0
|
|
CA
|
V:PRO95
|
4.9
|
82.8
|
1.0
|
|
C
|
V:CYS91
|
4.9
|
90.1
|
1.0
|
|
C
|
V:PRO95
|
4.9
|
82.8
|
1.0
|
|
Calcium binding site 3 out
of 8 in 9e9y
Go back to
Calcium Binding Sites List in 9e9y
Calcium binding site 3 out
of 8 in the Weev Mcmillan Vlp in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Weev Mcmillan Vlp in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Ca201
b:112.6
occ:1.00
|
CB
|
X:ASP63
|
2.2
|
141.0
|
1.0
|
|
OD2
|
X:ASP63
|
2.3
|
141.0
|
1.0
|
|
OD2
|
X:ASP53
|
2.3
|
118.9
|
1.0
|
|
CG
|
X:ASP63
|
2.3
|
141.0
|
1.0
|
|
OD1
|
X:ASP53
|
2.3
|
118.9
|
1.0
|
|
O
|
X:ASP55
|
2.4
|
129.3
|
1.0
|
|
OD2
|
X:ASP57
|
2.4
|
128.2
|
1.0
|
|
CG
|
X:ASP53
|
2.6
|
118.9
|
1.0
|
|
O
|
X:TRP50
|
2.9
|
134.5
|
1.0
|
|
OD1
|
X:ASP63
|
3.2
|
141.0
|
1.0
|
|
C
|
X:ASP55
|
3.3
|
129.3
|
1.0
|
|
CG
|
X:ASP57
|
3.5
|
128.2
|
1.0
|
|
CA
|
X:ASP63
|
3.6
|
141.0
|
1.0
|
|
N
|
X:ASP57
|
3.8
|
128.2
|
1.0
|
|
C
|
X:TRP50
|
3.9
|
134.5
|
1.0
|
|
CA
|
X:GLU56
|
4.0
|
128.6
|
1.0
|
|
N
|
X:GLU56
|
4.0
|
128.6
|
1.0
|
|
CB
|
X:ASP53
|
4.0
|
118.9
|
1.0
|
|
O
|
X:ASP63
|
4.1
|
141.0
|
1.0
|
|
N
|
X:ASP55
|
4.1
|
129.3
|
1.0
|
|
CB
|
X:ASP57
|
4.1
|
128.2
|
1.0
|
|
CA
|
X:ASP55
|
4.2
|
129.3
|
1.0
|
|
CA
|
X:TRP50
|
4.3
|
134.5
|
1.0
|
|
C
|
X:GLU56
|
4.3
|
128.6
|
1.0
|
|
C
|
X:ASP63
|
4.3
|
141.0
|
1.0
|
|
CB
|
X:TRP50
|
4.3
|
134.5
|
1.0
|
|
OD1
|
X:ASP57
|
4.5
|
128.2
|
1.0
|
|
CB
|
X:ASP55
|
4.6
|
129.3
|
1.0
|
|
N
|
X:ASP63
|
4.6
|
141.0
|
1.0
|
|
CA
|
X:ASP57
|
4.6
|
128.2
|
1.0
|
|
N
|
X:ASP53
|
4.7
|
118.9
|
1.0
|
|
N
|
X:GLY54
|
4.8
|
119.0
|
1.0
|
|
CA
|
X:ASP53
|
4.8
|
118.9
|
1.0
|
|
N
|
X:LYS51
|
5.0
|
153.2
|
1.0
|
|
Calcium binding site 4 out
of 8 in 9e9y
Go back to
Calcium Binding Sites List in 9e9y
Calcium binding site 4 out
of 8 in the Weev Mcmillan Vlp in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Weev Mcmillan Vlp in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Ca202
b:116.1
occ:1.00
|
OD2
|
X:ASP102
|
2.3
|
118.8
|
1.0
|
|
OD1
|
X:ASP92
|
2.3
|
105.7
|
1.0
|
|
OD2
|
X:ASP96
|
2.3
|
131.2
|
1.0
|
|
O
|
X:ASP94
|
2.4
|
128.2
|
1.0
|
|
O
|
X:TRP89
|
2.4
|
88.6
|
1.0
|
|
OD2
|
X:ASP92
|
2.5
|
105.7
|
1.0
|
|
CG
|
X:ASP92
|
2.7
|
105.7
|
1.0
|
|
CG
|
X:GLU103
|
3.0
|
132.8
|
1.0
|
|
C
|
X:ASP94
|
3.3
|
128.2
|
1.0
|
|
CG
|
X:ASP96
|
3.4
|
131.2
|
1.0
|
|
CG
|
X:ASP102
|
3.5
|
118.8
|
1.0
|
|
C
|
X:TRP89
|
3.5
|
88.6
|
1.0
|
|
NZ
|
K:LYS190
|
3.5
|
158.9
|
1.0
|
|
CA
|
X:PRO95
|
3.8
|
130.1
|
1.0
|
|
N
|
X:PRO95
|
4.0
|
130.1
|
1.0
|
|
CA
|
X:TRP89
|
4.0
|
88.6
|
1.0
|
|
CD
|
X:GLU103
|
4.0
|
132.8
|
1.0
|
|
CB
|
X:GLU103
|
4.1
|
132.8
|
1.0
|
|
CB
|
X:ASP92
|
4.1
|
105.7
|
1.0
|
|
N
|
X:ASP96
|
4.1
|
131.2
|
1.0
|
|
C
|
X:PRO95
|
4.1
|
130.1
|
1.0
|
|
CB
|
X:TRP89
|
4.1
|
88.6
|
1.0
|
|
OD1
|
X:ASP96
|
4.2
|
131.2
|
1.0
|
|
CB
|
X:ASP96
|
4.2
|
131.2
|
1.0
|
|
N
|
X:ASP94
|
4.2
|
128.2
|
1.0
|
|
CB
|
X:ASP102
|
4.3
|
118.8
|
1.0
|
|
CA
|
X:ASP94
|
4.3
|
128.2
|
1.0
|
|
O
|
X:ASP102
|
4.3
|
118.8
|
1.0
|
|
OD1
|
X:ASP102
|
4.4
|
118.8
|
1.0
|
|
OE2
|
X:GLU103
|
4.4
|
132.8
|
1.0
|
|
N
|
X:ASP92
|
4.6
|
105.7
|
1.0
|
|
CE
|
K:LYS190
|
4.6
|
158.9
|
1.0
|
|
C
|
X:ASP102
|
4.6
|
118.8
|
1.0
|
|
N
|
X:LYS90
|
4.6
|
102.7
|
1.0
|
|
CB
|
X:ASP94
|
4.7
|
128.2
|
1.0
|
|
CA
|
X:ASP96
|
4.8
|
131.2
|
1.0
|
|
CA
|
X:ASP92
|
4.9
|
105.7
|
1.0
|
|
N
|
X:CYS91
|
4.9
|
117.7
|
1.0
|
|
O
|
X:PRO95
|
4.9
|
130.1
|
1.0
|
|
OE1
|
X:GLU103
|
4.9
|
132.8
|
1.0
|
|
CA
|
X:LYS90
|
5.0
|
102.7
|
1.0
|
|
N
|
X:GLU103
|
5.0
|
132.8
|
1.0
|
|
C
|
X:LYS90
|
5.0
|
102.7
|
1.0
|
|
Calcium binding site 5 out
of 8 in 9e9y
Go back to
Calcium Binding Sites List in 9e9y
Calcium binding site 5 out
of 8 in the Weev Mcmillan Vlp in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Weev Mcmillan Vlp in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Y:Ca201
b:150.7
occ:1.00
|
O
|
Y:ASP55
|
1.9
|
150.3
|
1.0
|
|
OD1
|
Y:ASP53
|
2.3
|
140.9
|
1.0
|
|
OD2
|
Y:ASP63
|
2.5
|
136.8
|
1.0
|
|
OD2
|
Y:ASP53
|
2.5
|
140.9
|
1.0
|
|
O
|
Y:TRP50
|
2.5
|
131.5
|
1.0
|
|
OD1
|
Y:ASP57
|
2.6
|
134.5
|
1.0
|
|
CG
|
Y:ASP57
|
2.7
|
134.5
|
1.0
|
|
CG
|
Y:ASP53
|
2.8
|
140.9
|
1.0
|
|
OD2
|
Y:ASP57
|
2.8
|
134.5
|
1.0
|
|
C
|
Y:ASP55
|
3.0
|
150.3
|
1.0
|
|
CG
|
Y:ASP63
|
3.4
|
136.8
|
1.0
|
|
CB
|
Y:TRP50
|
3.5
|
131.5
|
1.0
|
|
C
|
Y:TRP50
|
3.5
|
131.5
|
1.0
|
|
NZ
|
C:LYS227
|
3.6
|
134.6
|
1.0
|
|
N
|
Y:ASP57
|
3.7
|
134.5
|
1.0
|
|
CA
|
Y:ASP55
|
3.7
|
150.3
|
1.0
|
|
CB
|
Y:ASP63
|
3.8
|
136.8
|
1.0
|
|
CB
|
Y:ASP55
|
3.8
|
150.3
|
1.0
|
|
CB
|
Y:ASP57
|
3.8
|
134.5
|
1.0
|
|
CA
|
Y:TRP50
|
3.8
|
131.5
|
1.0
|
|
N
|
Y:ASP55
|
3.9
|
150.3
|
1.0
|
|
N
|
Y:GLU56
|
4.0
|
141.8
|
1.0
|
|
CA
|
Y:GLU56
|
4.2
|
141.8
|
1.0
|
|
C
|
Y:GLU56
|
4.2
|
141.8
|
1.0
|
|
CB
|
Y:ASP53
|
4.2
|
140.9
|
1.0
|
|
CA
|
Y:ASP57
|
4.3
|
134.5
|
1.0
|
|
CG
|
Y:TRP50
|
4.4
|
131.5
|
1.0
|
|
OD1
|
Y:ASP63
|
4.4
|
136.8
|
1.0
|
|
OD2
|
Y:ASP55
|
4.6
|
150.3
|
1.0
|
|
N
|
Y:LYS51
|
4.7
|
137.1
|
1.0
|
|
CG
|
Y:ASP55
|
4.7
|
150.3
|
1.0
|
|
N
|
Y:ASP53
|
4.8
|
140.9
|
1.0
|
|
CA
|
Y:ASP53
|
5.0
|
140.9
|
1.0
|
|
CE
|
C:LYS227
|
5.0
|
134.6
|
1.0
|
|
Calcium binding site 6 out
of 8 in 9e9y
Go back to
Calcium Binding Sites List in 9e9y
Calcium binding site 6 out
of 8 in the Weev Mcmillan Vlp in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Weev Mcmillan Vlp in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Y:Ca202
b:89.3
occ:1.00
|
O
|
Y:TRP89
|
2.2
|
74.3
|
1.0
|
|
OD1
|
Y:ASP102
|
2.3
|
88.8
|
1.0
|
|
OE2
|
Y:GLU103
|
2.3
|
89.9
|
1.0
|
|
OD1
|
Y:ASP92
|
2.4
|
90.2
|
1.0
|
|
OD2
|
Y:ASP96
|
2.4
|
88.8
|
1.0
|
|
O
|
Y:ASP94
|
2.4
|
84.6
|
1.0
|
|
O
|
Y:ASP102
|
2.5
|
88.8
|
1.0
|
|
CG
|
Y:ASP102
|
3.2
|
88.8
|
1.0
|
|
CD
|
Y:GLU103
|
3.3
|
89.9
|
1.0
|
|
C
|
Y:ASP102
|
3.3
|
88.8
|
1.0
|
|
CB
|
Y:ASP102
|
3.4
|
88.8
|
1.0
|
|
CG
|
Y:ASP92
|
3.4
|
90.2
|
1.0
|
|
C
|
Y:TRP89
|
3.4
|
74.3
|
1.0
|
|
CG
|
Y:GLU103
|
3.5
|
89.9
|
1.0
|
|
CG
|
Y:ASP96
|
3.6
|
88.8
|
1.0
|
|
C
|
Y:ASP94
|
3.6
|
84.6
|
1.0
|
|
N
|
Y:CYS91
|
3.8
|
88.1
|
1.0
|
|
N
|
Y:ASP92
|
3.9
|
90.2
|
1.0
|
|
OD2
|
Y:ASP92
|
3.9
|
90.2
|
1.0
|
|
CA
|
Y:ASP102
|
4.0
|
88.8
|
1.0
|
|
N
|
Y:ASP94
|
4.1
|
84.6
|
1.0
|
|
NZ
|
D:LYS190
|
4.1
|
160.0
|
1.0
|
|
N
|
Y:GLU103
|
4.2
|
89.9
|
1.0
|
|
CA
|
Y:LYS90
|
4.2
|
88.1
|
1.0
|
|
OD1
|
Y:ASP96
|
4.3
|
88.8
|
1.0
|
|
C
|
Y:LYS90
|
4.3
|
88.1
|
1.0
|
|
N
|
Y:LYS90
|
4.3
|
88.1
|
1.0
|
|
OD2
|
Y:ASP102
|
4.4
|
88.8
|
1.0
|
|
CA
|
Y:TRP89
|
4.4
|
74.3
|
1.0
|
|
OE1
|
Y:GLU103
|
4.4
|
89.9
|
1.0
|
|
N
|
Y:GLY93
|
4.4
|
90.1
|
1.0
|
|
CA
|
Y:ASP94
|
4.5
|
84.6
|
1.0
|
|
N
|
Y:PRO95
|
4.5
|
85.6
|
1.0
|
|
CA
|
Y:PRO95
|
4.5
|
85.6
|
1.0
|
|
CA
|
Y:CYS91
|
4.5
|
88.1
|
1.0
|
|
CB
|
Y:GLU103
|
4.5
|
89.9
|
1.0
|
|
CA
|
Y:GLU103
|
4.5
|
89.9
|
1.0
|
|
CB
|
Y:ASP92
|
4.6
|
90.2
|
1.0
|
|
CB
|
Y:ASP96
|
4.6
|
88.8
|
1.0
|
|
CB
|
Y:TRP89
|
4.6
|
74.3
|
1.0
|
|
N
|
Y:ASP96
|
4.7
|
88.8
|
1.0
|
|
CA
|
Y:ASP92
|
4.7
|
90.2
|
1.0
|
|
C
|
Y:PRO95
|
4.7
|
85.6
|
1.0
|
|
C
|
Y:CYS91
|
4.8
|
88.1
|
1.0
|
|
OD1
|
Y:ASP94
|
5.0
|
84.6
|
1.0
|
|
Calcium binding site 7 out
of 8 in 9e9y
Go back to
Calcium Binding Sites List in 9e9y
Calcium binding site 7 out
of 8 in the Weev Mcmillan Vlp in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Weev Mcmillan Vlp in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Z:Ca201
b:87.0
occ:1.00
|
O
|
Z:ASP55
|
2.3
|
98.1
|
1.0
|
|
OD1
|
Z:ASP57
|
2.4
|
94.4
|
1.0
|
|
OD1
|
Z:ASP53
|
2.4
|
98.2
|
1.0
|
|
OD2
|
Z:ASP53
|
2.4
|
98.2
|
1.0
|
|
OD2
|
Z:ASP63
|
2.4
|
96.2
|
1.0
|
|
O
|
Z:TRP50
|
2.5
|
93.3
|
1.0
|
|
CG
|
Z:ASP53
|
2.7
|
98.2
|
1.0
|
|
C
|
Z:ASP55
|
3.1
|
98.1
|
1.0
|
|
CG
|
Z:ASP57
|
3.5
|
94.4
|
1.0
|
|
C
|
Z:TRP50
|
3.5
|
93.3
|
1.0
|
|
CG
|
Z:ASP63
|
3.6
|
96.2
|
1.0
|
|
CB
|
Z:TRP50
|
3.6
|
93.3
|
1.0
|
|
NZ
|
A:LYS227
|
3.8
|
127.3
|
1.0
|
|
CB
|
Z:ASP55
|
3.8
|
98.1
|
1.0
|
|
CA
|
Z:ASP55
|
3.8
|
98.1
|
1.0
|
|
N
|
Z:GLU56
|
3.9
|
103.6
|
1.0
|
|
CA
|
Z:TRP50
|
3.9
|
93.3
|
1.0
|
|
N
|
Z:ASP55
|
4.0
|
98.1
|
1.0
|
|
N
|
Z:ASP57
|
4.0
|
94.4
|
1.0
|
|
CA
|
Z:GLU56
|
4.1
|
103.6
|
1.0
|
|
CB
|
Z:ASP53
|
4.2
|
98.2
|
1.0
|
|
OD2
|
Z:ASP57
|
4.3
|
94.4
|
1.0
|
|
CB
|
Z:ASP57
|
4.4
|
94.4
|
1.0
|
|
CB
|
Z:ASP63
|
4.4
|
96.2
|
1.0
|
|
C
|
Z:GLU56
|
4.4
|
103.6
|
1.0
|
|
OD1
|
Z:ASP63
|
4.5
|
96.2
|
1.0
|
|
N
|
Z:LYS51
|
4.7
|
99.4
|
1.0
|
|
CG
|
Z:TRP50
|
4.7
|
93.3
|
1.0
|
|
N
|
Z:ASP53
|
4.7
|
98.2
|
1.0
|
|
CA
|
Z:ASP57
|
4.8
|
94.4
|
1.0
|
|
CG
|
Z:ASP55
|
4.9
|
98.1
|
1.0
|
|
CA
|
Z:ASP53
|
4.9
|
98.2
|
1.0
|
|
Calcium binding site 8 out
of 8 in 9e9y
Go back to
Calcium Binding Sites List in 9e9y
Calcium binding site 8 out
of 8 in the Weev Mcmillan Vlp in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Weev Mcmillan Vlp in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Z:Ca202
b:150.3
occ:1.00
|
NZ
|
B:LYS190
|
2.2
|
172.3
|
1.0
|
|
O
|
Z:ASP94
|
2.3
|
126.3
|
1.0
|
|
OD2
|
Z:ASP102
|
2.4
|
122.2
|
1.0
|
|
OD1
|
Z:ASP92
|
2.4
|
122.7
|
1.0
|
|
OD2
|
Z:ASP96
|
2.4
|
114.8
|
1.0
|
|
CG
|
Z:ASP96
|
2.6
|
114.8
|
1.0
|
|
OD1
|
Z:ASP96
|
2.6
|
114.8
|
1.0
|
|
OE2
|
Z:GLU103
|
2.6
|
118.5
|
1.0
|
|
O
|
Z:TRP89
|
2.8
|
119.2
|
1.0
|
|
CG
|
Z:ASP92
|
3.5
|
122.7
|
1.0
|
|
C
|
Z:ASP94
|
3.5
|
126.3
|
1.0
|
|
CE
|
B:LYS190
|
3.5
|
172.3
|
1.0
|
|
CG
|
Z:ASP102
|
3.6
|
122.2
|
1.0
|
|
CB
|
Z:ASP96
|
3.6
|
114.8
|
1.0
|
|
CD
|
Z:GLU103
|
3.7
|
118.5
|
1.0
|
|
C
|
Z:TRP89
|
3.7
|
119.2
|
1.0
|
|
N
|
Z:ASP96
|
3.8
|
114.8
|
1.0
|
|
OD2
|
Z:ASP92
|
4.1
|
122.7
|
1.0
|
|
CB
|
Z:TRP89
|
4.2
|
119.2
|
1.0
|
|
N
|
Z:ASP94
|
4.2
|
126.3
|
1.0
|
|
CB
|
Z:ASP102
|
4.3
|
122.2
|
1.0
|
|
CA
|
Z:ASP94
|
4.3
|
126.3
|
1.0
|
|
CA
|
Z:ASP96
|
4.3
|
114.8
|
1.0
|
|
CG
|
Z:GLU103
|
4.3
|
118.5
|
1.0
|
|
C
|
Z:PRO95
|
4.4
|
122.1
|
1.0
|
|
CB
|
Z:ASP92
|
4.4
|
122.7
|
1.0
|
|
CB
|
Z:ASP94
|
4.4
|
126.3
|
1.0
|
|
CA
|
Z:TRP89
|
4.5
|
119.2
|
1.0
|
|
N
|
Z:PRO95
|
4.5
|
122.1
|
1.0
|
|
CA
|
Z:PRO95
|
4.5
|
122.1
|
1.0
|
|
OD1
|
Z:ASP102
|
4.5
|
122.2
|
1.0
|
|
N
|
Z:LYS90
|
4.6
|
118.2
|
1.0
|
|
OE1
|
Z:GLU103
|
4.6
|
118.5
|
1.0
|
|
N
|
Z:ASP92
|
4.6
|
122.7
|
1.0
|
|
CA
|
Z:LYS90
|
4.7
|
118.2
|
1.0
|
|
CD
|
B:LYS190
|
4.7
|
172.3
|
1.0
|
|
OD2
|
Z:ASP94
|
4.8
|
126.3
|
1.0
|
|
N
|
Z:CYS91
|
4.9
|
127.0
|
1.0
|
|
Reference:
S.Raju,
S.Palakurty,
A.Sariol,
N.Wagoner,
L.J.Adams,
S.Hui,
W.B.Klimstra,
D.H.Fremont,
M.S.Diamond.
Structural Basis For Plasticity in Receptor Engagement By An Encephalitic Alphavirus. Cell 2025.
ISSN: ISSN 1097-4172
PubMed: 40187344
DOI: 10.1016/J.CELL.2025.02.036
Page generated: Thu Jul 10 09:27:35 2025
|
