Calcium in PDB 9egq: Human BEST1 Bound to Gaba in An Intermediate State
Calcium Binding Sites:
The binding sites of Calcium atom in the Human BEST1 Bound to Gaba in An Intermediate State
(pdb code 9egq). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the
Human BEST1 Bound to Gaba in An Intermediate State, PDB code: 9egq:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
Calcium binding site 1 out
of 5 in 9egq
Go back to
Calcium Binding Sites List in 9egq
Calcium binding site 1 out
of 5 in the Human BEST1 Bound to Gaba in An Intermediate State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Human BEST1 Bound to Gaba in An Intermediate State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:24.7
occ:1.00
|
O
|
A:ASN296
|
2.3
|
26.9
|
1.0
|
|
O
|
E:ALA10
|
2.4
|
30.8
|
1.0
|
|
OD2
|
A:ASP304
|
2.4
|
33.1
|
1.0
|
|
OD2
|
A:ASP301
|
2.5
|
33.6
|
1.0
|
|
O
|
A:GLN293
|
2.6
|
31.7
|
1.0
|
|
OD1
|
A:ASP304
|
2.8
|
32.5
|
1.0
|
|
CG
|
A:ASP304
|
3.0
|
30.1
|
1.0
|
|
C
|
A:ASN296
|
3.5
|
22.8
|
1.0
|
|
C
|
E:ALA10
|
3.5
|
27.9
|
1.0
|
|
CG
|
A:ASP301
|
3.6
|
33.8
|
1.0
|
|
C
|
A:GLN293
|
3.7
|
24.1
|
1.0
|
|
CB
|
A:ASP301
|
4.1
|
32.0
|
1.0
|
|
CA
|
A:GLN293
|
4.2
|
23.6
|
1.0
|
|
N
|
A:GLY299
|
4.2
|
27.1
|
1.0
|
|
CA
|
E:ASN11
|
4.3
|
24.9
|
1.0
|
|
O
|
E:VAL9
|
4.3
|
34.0
|
1.0
|
|
N
|
E:ASN11
|
4.3
|
29.5
|
1.0
|
|
CA
|
A:ASN296
|
4.3
|
20.1
|
1.0
|
|
N
|
A:PRO297
|
4.3
|
19.5
|
1.0
|
|
CA
|
A:PRO297
|
4.4
|
17.4
|
1.0
|
|
CA
|
A:GLY299
|
4.4
|
25.3
|
1.0
|
|
N
|
A:ASN296
|
4.4
|
23.5
|
1.0
|
|
CA
|
E:ALA10
|
4.4
|
23.6
|
1.0
|
|
CB
|
A:ASP304
|
4.5
|
23.2
|
1.0
|
|
CB
|
A:ASN296
|
4.5
|
18.3
|
1.0
|
|
O
|
A:GLU292
|
4.6
|
32.8
|
1.0
|
|
OD1
|
A:ASP301
|
4.6
|
40.4
|
1.0
|
|
CG
|
A:GLN293
|
4.6
|
30.7
|
1.0
|
|
C
|
A:PRO297
|
4.8
|
21.8
|
1.0
|
|
N
|
A:ASP301
|
4.8
|
30.8
|
1.0
|
|
N
|
A:LEU294
|
4.8
|
19.7
|
1.0
|
|
C
|
E:ASN11
|
4.9
|
28.6
|
1.0
|
|
N
|
E:ALA12
|
4.9
|
30.5
|
1.0
|
|
N
|
A:PHE298
|
4.9
|
26.4
|
1.0
|
|
OD1
|
E:ASN11
|
5.0
|
31.2
|
1.0
|
|
Calcium binding site 2 out
of 5 in 9egq
Go back to
Calcium Binding Sites List in 9egq
Calcium binding site 2 out
of 5 in the Human BEST1 Bound to Gaba in An Intermediate State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Human BEST1 Bound to Gaba in An Intermediate State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca501
b:24.7
occ:1.00
|
O
|
B:ASN296
|
2.3
|
30.2
|
1.0
|
|
OD2
|
B:ASP301
|
2.4
|
31.6
|
1.0
|
|
O
|
A:ALA10
|
2.5
|
29.8
|
1.0
|
|
OD2
|
B:ASP304
|
2.5
|
31.5
|
1.0
|
|
O
|
B:GLN293
|
2.6
|
29.9
|
1.0
|
|
OD1
|
B:ASP304
|
2.9
|
32.1
|
1.0
|
|
CG
|
B:ASP304
|
3.0
|
30.2
|
1.0
|
|
C
|
B:ASN296
|
3.5
|
25.4
|
1.0
|
|
CG
|
B:ASP301
|
3.5
|
31.6
|
1.0
|
|
C
|
A:ALA10
|
3.6
|
29.3
|
1.0
|
|
C
|
B:GLN293
|
3.7
|
24.7
|
1.0
|
|
CB
|
B:ASP301
|
4.1
|
29.5
|
1.0
|
|
CA
|
B:GLN293
|
4.1
|
22.9
|
1.0
|
|
N
|
B:GLY299
|
4.3
|
24.7
|
1.0
|
|
CA
|
B:PRO297
|
4.3
|
16.4
|
1.0
|
|
N
|
B:PRO297
|
4.3
|
20.5
|
1.0
|
|
CA
|
A:ASN11
|
4.3
|
26.3
|
1.0
|
|
CA
|
B:ASN296
|
4.3
|
20.4
|
1.0
|
|
O
|
A:VAL9
|
4.4
|
31.8
|
1.0
|
|
N
|
A:ASN11
|
4.4
|
27.8
|
1.0
|
|
CA
|
B:GLY299
|
4.4
|
24.6
|
1.0
|
|
N
|
B:ASN296
|
4.4
|
21.3
|
1.0
|
|
CB
|
B:ASN296
|
4.5
|
17.9
|
1.0
|
|
OD1
|
B:ASP301
|
4.5
|
38.7
|
1.0
|
|
CB
|
B:ASP304
|
4.5
|
24.3
|
1.0
|
|
O
|
B:GLU292
|
4.5
|
33.2
|
1.0
|
|
CA
|
A:ALA10
|
4.5
|
26.0
|
1.0
|
|
CG
|
B:GLN293
|
4.6
|
29.6
|
1.0
|
|
C
|
B:PRO297
|
4.7
|
21.4
|
1.0
|
|
N
|
B:ASP301
|
4.8
|
30.5
|
1.0
|
|
N
|
B:LEU294
|
4.8
|
22.7
|
1.0
|
|
C
|
A:ASN11
|
4.9
|
29.3
|
1.0
|
|
N
|
B:PHE298
|
4.9
|
25.8
|
1.0
|
|
N
|
A:ALA12
|
4.9
|
28.5
|
1.0
|
|
CB
|
B:GLN293
|
5.0
|
24.8
|
1.0
|
|
Calcium binding site 3 out
of 5 in 9egq
Go back to
Calcium Binding Sites List in 9egq
Calcium binding site 3 out
of 5 in the Human BEST1 Bound to Gaba in An Intermediate State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Human BEST1 Bound to Gaba in An Intermediate State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca501
b:25.8
occ:1.00
|
O
|
C:ASN296
|
2.3
|
26.6
|
1.0
|
|
OD2
|
C:ASP304
|
2.4
|
29.2
|
1.0
|
|
O
|
B:ALA10
|
2.4
|
27.5
|
1.0
|
|
OD2
|
C:ASP301
|
2.5
|
27.8
|
1.0
|
|
O
|
C:GLN293
|
2.6
|
31.1
|
1.0
|
|
OD1
|
C:ASP304
|
2.9
|
32.9
|
1.0
|
|
CG
|
C:ASP304
|
3.0
|
28.2
|
1.0
|
|
C
|
C:ASN296
|
3.5
|
24.6
|
1.0
|
|
C
|
B:ALA10
|
3.5
|
27.2
|
1.0
|
|
CG
|
C:ASP301
|
3.6
|
30.3
|
1.0
|
|
C
|
C:GLN293
|
3.6
|
25.7
|
1.0
|
|
CB
|
C:ASP301
|
4.1
|
28.3
|
1.0
|
|
CA
|
C:GLN293
|
4.1
|
21.7
|
1.0
|
|
CA
|
B:ASN11
|
4.2
|
26.3
|
1.0
|
|
N
|
B:ASN11
|
4.3
|
28.9
|
1.0
|
|
O
|
B:VAL9
|
4.3
|
35.2
|
1.0
|
|
N
|
C:GLY299
|
4.3
|
24.5
|
1.0
|
|
N
|
C:PRO297
|
4.3
|
20.9
|
1.0
|
|
CA
|
C:PRO297
|
4.3
|
16.6
|
1.0
|
|
CA
|
C:ASN296
|
4.3
|
21.8
|
1.0
|
|
N
|
C:ASN296
|
4.4
|
23.4
|
1.0
|
|
O
|
C:GLU292
|
4.5
|
36.5
|
1.0
|
|
CB
|
C:ASN296
|
4.5
|
18.2
|
1.0
|
|
CB
|
C:ASP304
|
4.5
|
23.2
|
1.0
|
|
CA
|
C:GLY299
|
4.5
|
24.9
|
1.0
|
|
CA
|
B:ALA10
|
4.5
|
25.2
|
1.0
|
|
OD1
|
C:ASP301
|
4.6
|
39.3
|
1.0
|
|
CG
|
C:GLN293
|
4.6
|
29.3
|
1.0
|
|
N
|
C:LEU294
|
4.8
|
22.9
|
1.0
|
|
C
|
C:PRO297
|
4.8
|
19.4
|
1.0
|
|
N
|
B:ALA12
|
4.8
|
29.8
|
1.0
|
|
C
|
B:ASN11
|
4.8
|
31.0
|
1.0
|
|
N
|
C:ASP301
|
4.8
|
29.7
|
1.0
|
|
N
|
C:PHE298
|
4.9
|
21.7
|
1.0
|
|
OD1
|
B:ASN11
|
5.0
|
35.2
|
1.0
|
|
CB
|
C:GLN293
|
5.0
|
22.9
|
1.0
|
|
Calcium binding site 4 out
of 5 in 9egq
Go back to
Calcium Binding Sites List in 9egq
Calcium binding site 4 out
of 5 in the Human BEST1 Bound to Gaba in An Intermediate State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Human BEST1 Bound to Gaba in An Intermediate State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca501
b:24.5
occ:1.00
|
O
|
D:ASN296
|
2.3
|
27.4
|
1.0
|
|
OD2
|
D:ASP301
|
2.5
|
32.8
|
1.0
|
|
O
|
C:ALA10
|
2.5
|
25.7
|
1.0
|
|
OD2
|
D:ASP304
|
2.5
|
32.3
|
1.0
|
|
O
|
D:GLN293
|
2.6
|
33.6
|
1.0
|
|
OD1
|
D:ASP304
|
2.8
|
33.1
|
1.0
|
|
CG
|
D:ASP304
|
3.0
|
31.1
|
1.0
|
|
C
|
D:ASN296
|
3.4
|
23.4
|
1.0
|
|
CG
|
D:ASP301
|
3.5
|
33.0
|
1.0
|
|
C
|
C:ALA10
|
3.6
|
25.6
|
1.0
|
|
C
|
D:GLN293
|
3.7
|
25.2
|
1.0
|
|
CB
|
D:ASP301
|
4.1
|
34.2
|
1.0
|
|
CA
|
D:GLN293
|
4.2
|
22.1
|
1.0
|
|
CA
|
D:PRO297
|
4.3
|
18.7
|
1.0
|
|
N
|
D:PRO297
|
4.3
|
20.8
|
1.0
|
|
CA
|
C:ASN11
|
4.3
|
25.1
|
1.0
|
|
N
|
D:GLY299
|
4.3
|
25.3
|
1.0
|
|
CA
|
D:ASN296
|
4.3
|
18.9
|
1.0
|
|
N
|
C:ASN11
|
4.3
|
28.2
|
1.0
|
|
O
|
C:VAL9
|
4.4
|
33.7
|
1.0
|
|
N
|
D:ASN296
|
4.4
|
22.6
|
1.0
|
|
CA
|
D:GLY299
|
4.5
|
25.8
|
1.0
|
|
CB
|
D:ASN296
|
4.5
|
18.3
|
1.0
|
|
OD1
|
D:ASP301
|
4.5
|
38.9
|
1.0
|
|
CB
|
D:ASP304
|
4.5
|
24.4
|
1.0
|
|
CA
|
C:ALA10
|
4.6
|
23.2
|
1.0
|
|
O
|
D:GLU292
|
4.6
|
28.1
|
1.0
|
|
CG
|
D:GLN293
|
4.6
|
31.9
|
1.0
|
|
C
|
D:PRO297
|
4.7
|
22.9
|
1.0
|
|
N
|
D:ASP301
|
4.7
|
28.8
|
1.0
|
|
N
|
D:LEU294
|
4.8
|
19.6
|
1.0
|
|
N
|
C:ALA12
|
4.9
|
29.5
|
1.0
|
|
C
|
C:ASN11
|
4.9
|
25.7
|
1.0
|
|
N
|
D:PHE298
|
4.9
|
25.6
|
1.0
|
|
Calcium binding site 5 out
of 5 in 9egq
Go back to
Calcium Binding Sites List in 9egq
Calcium binding site 5 out
of 5 in the Human BEST1 Bound to Gaba in An Intermediate State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Human BEST1 Bound to Gaba in An Intermediate State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca501
b:28.0
occ:1.00
|
O
|
E:ASN296
|
2.3
|
27.2
|
1.0
|
|
O
|
D:ALA10
|
2.4
|
27.3
|
1.0
|
|
OD2
|
E:ASP304
|
2.4
|
28.4
|
1.0
|
|
OD2
|
E:ASP301
|
2.4
|
29.8
|
1.0
|
|
O
|
E:GLN293
|
2.6
|
28.5
|
1.0
|
|
OD1
|
E:ASP304
|
2.9
|
29.9
|
1.0
|
|
CG
|
E:ASP304
|
3.0
|
27.0
|
1.0
|
|
C
|
E:ASN296
|
3.4
|
23.5
|
1.0
|
|
C
|
D:ALA10
|
3.5
|
28.3
|
1.0
|
|
CG
|
E:ASP301
|
3.6
|
30.3
|
1.0
|
|
C
|
E:GLN293
|
3.7
|
24.3
|
1.0
|
|
CA
|
E:GLN293
|
4.1
|
21.7
|
1.0
|
|
CB
|
E:ASP301
|
4.1
|
30.5
|
1.0
|
|
O
|
D:VAL9
|
4.2
|
35.0
|
1.0
|
|
CA
|
D:ASN11
|
4.2
|
25.8
|
1.0
|
|
N
|
D:ASN11
|
4.3
|
29.2
|
1.0
|
|
CA
|
E:ASN296
|
4.3
|
21.8
|
1.0
|
|
N
|
E:GLY299
|
4.3
|
25.8
|
1.0
|
|
N
|
E:PRO297
|
4.3
|
21.0
|
1.0
|
|
N
|
E:ASN296
|
4.4
|
24.3
|
1.0
|
|
CA
|
E:PRO297
|
4.4
|
16.7
|
1.0
|
|
CB
|
E:ASN296
|
4.4
|
20.8
|
1.0
|
|
O
|
E:GLU292
|
4.4
|
34.5
|
1.0
|
|
CA
|
D:ALA10
|
4.5
|
29.2
|
1.0
|
|
CA
|
E:GLY299
|
4.5
|
25.6
|
1.0
|
|
OD1
|
E:ASP301
|
4.5
|
34.7
|
1.0
|
|
CB
|
E:ASP304
|
4.5
|
22.7
|
1.0
|
|
CG
|
E:GLN293
|
4.6
|
29.2
|
1.0
|
|
C
|
E:PRO297
|
4.8
|
20.1
|
1.0
|
|
N
|
E:LEU294
|
4.8
|
22.7
|
1.0
|
|
N
|
E:ASP301
|
4.9
|
28.0
|
1.0
|
|
C
|
D:ASN11
|
4.9
|
29.1
|
1.0
|
|
N
|
D:ALA12
|
4.9
|
30.5
|
1.0
|
|
N
|
E:PHE298
|
4.9
|
22.6
|
1.0
|
|
OD1
|
D:ASN11
|
5.0
|
32.7
|
1.0
|
|
CB
|
E:GLN293
|
5.0
|
25.1
|
1.0
|
|
Reference:
S.Pant,
S.W.Tam,
S.B.Long.
The Pentameric Chloride Channel BEST1 Is Activated By Extracellular Gaba To Be Published.
Page generated: Thu Jul 10 09:30:29 2025
|
