Calcium in PDB 9f9v: Crystal Structure of 892_05174 From Planctomycetota Strain 892

The structure of Crystal Structure of 892_05174 From Planctomycetota Strain 892, PDB code: 9f9v was solved by C.Perez-Cruz, A.Moraleda-Montoya, R.Liebana, M.Lorizate, U.Arrizabalaga, M.Garcia-Alija, O.Terrones, F.X.Contreras, M.E.Guerin, B.Trastoy, L.Alonso-Saez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.52 / 1.57
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	44.39, 62.11, 66.9, 68.83, 88.34, 78.92
R / Rfree (%)	20.9 / 23.3

The binding sites of Calcium atom in the Crystal Structure of 892_05174 From Planctomycetota Strain 892 (pdb code 9f9v). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of 892_05174 From Planctomycetota Strain 892, PDB code: 9f9v:

Calcium binding site 1 out of 1 in the Crystal Structure of 892_05174 From Planctomycetota Strain 892


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of 892_05174 From Planctomycetota Strain 892 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca404 b:30.0 occ:1.00 HG1 B:THR8 2.5 30.1 1.0 O B:HOH524 2.7 31.3 1.0 O B:VAL9 2.7 22.4 1.0 O B:TYR327 2.8 29.4 1.0 OG1 B:THR8 2.8 25.1 1.0 HB B:THR8 3.0 37.0 1.0 HB3 B:TYR327 3.0 27.7 1.0 CB B:THR8 3.4 30.9 1.0 HG23 B:VAL11 3.4 25.6 1.0 HA B:TYR327 3.7 33.2 1.0 O B:HOH631 3.7 24.8 1.0 C B:TYR327 3.7 28.9 1.0 C B:VAL9 3.8 22.9 1.0 H B:VAL9 3.8 30.6 1.0 N B:VAL9 3.8 25.5 1.0 HB B:VAL9 3.8 32.7 1.0 CB B:TYR327 3.8 23.1 1.0 O B:HOH656 3.9 44.7 1.0 CA B:TYR327 4.0 27.6 1.0 HG21 B:VAL11 4.0 25.6 1.0 C B:THR8 4.1 25.0 1.0 CG2 B:VAL11 4.2 21.3 1.0 CA B:VAL9 4.2 21.7 1.0 HG21 B:THR8 4.3 34.5 1.0 CA B:THR8 4.4 24.6 1.0 O B:LEU32 4.5 24.9 1.0 CG2 B:THR8 4.5 28.8 1.0 HB2 B:TYR327 4.5 27.7 1.0 CB B:VAL9 4.5 27.2 1.0 CG B:TYR327 4.6 22.5 1.0 O B:THR8 4.6 24.5 1.0 H B:VAL11 4.7 23.1 1.0 HB B:VAL11 4.7 21.8 1.0 HA B:PRO10 4.7 22.9 1.0 O B:HOH643 4.7 36.2 1.0 HD1 B:TYR327 4.8 28.0 1.0 O B:HOH545 4.8 28.0 1.0 HG22 B:VAL11 4.8 25.6 1.0 HA B:ARG328 4.9 51.2 1.0 O B:HOH539 4.9 35.8 1.0 N B:PRO10 4.9 21.6 1.0 CD1 B:TYR327 5.0 23.4 1.0 HA B:THR8 5.0 29.5 1.0 N B:ARG328 5.0 36.4 1.0

C.Perez-Cruz, A.Moraleda-Montoya, R.Liebana, O.Terrones, U.Arrizabalaga, M.Garcia-Alija, M.Lorizate, A.Martinez Gascuena, I.Garcia-Alvarez, J.A.Nieto-Garai, J.Olazar-Intxausti, B.Rodriguez-Colinas, E.Mann, J.L.Chiara, F.X.Contreras, M.E.Guerin, B.Trastoy, L.Alonso-Saez. Mechanisms of Recalcitrant Fucoidan Breakdown in Marine Planctomycetota. Nat Commun V. 15 10906 2024.
ISSN: ESSN 2041-1723
PubMed: 39738071
DOI: 10.1038/S41467-024-55268-W