Calcium in PDB 9geq: Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map

The structure of Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map also contains other interesting chemical elements:

Iron	(Fe)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Calcium atom in the Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map (pdb code 9geq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map, PDB code: 9geq:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ N:Ca603 b:42.6 occ:1.00 OG N:SER174 2.3 63.0 1.0 O N:PHE170 2.3 56.4 1.0 O N:THR168 2.4 52.8 1.0 OG1 N:THR168 2.5 50.9 1.0 OD1 N:ASP172 2.5 56.7 1.0 OD2 M:ASP96 2.7 46.1 1.0 O M:ASP96 3.0 33.7 1.0 C N:THR168 3.4 46.3 1.0 CB N:SER174 3.4 58.9 1.0 C N:PHE170 3.5 50.1 1.0 CG N:ASP172 3.6 58.4 1.0 CB N:THR168 3.7 46.9 1.0 CG M:ASP96 3.9 46.2 1.0 C M:ASP96 4.0 33.4 1.0 CA N:THR168 4.0 43.6 1.0 N N:PHE170 4.0 50.5 1.0 OD2 N:ASP172 4.0 65.4 1.0 N N:ASP172 4.1 45.4 1.0 N N:THR168 4.3 47.5 1.0 C N:SER169 4.3 48.2 1.0 CA N:PHE170 4.3 47.5 1.0 N N:SER174 4.3 53.2 1.0 N N:SER169 4.4 42.4 1.0 CA N:SER174 4.5 52.0 1.0 N N:VAL171 4.5 47.1 1.0 OD1 M:ASP96 4.7 54.0 1.0 CA N:VAL171 4.7 48.5 1.0 CA M:ASP96 4.7 32.9 1.0 O N:SER169 4.7 51.5 1.0 CA N:SER169 4.7 41.4 1.0 CA M:LEU97 4.8 30.2 1.0 O M:LEU97 4.8 35.5 1.0 N M:LEU97 4.8 35.1 1.0 CB N:ASP172 4.8 50.9 1.0 CG2 N:THR168 4.8 49.3 1.0 CB M:ASP96 4.9 36.7 1.0 CA N:ASP172 4.9 47.3 1.0 CB N:PHE170 5.0 48.5 1.0 C N:VAL171 5.0 48.8 1.0

Calcium binding site 2 out of 2 in the Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ L:Ca603 b:34.5 occ:1.00 OG L:SER174 2.3 47.0 1.0 O L:PHE170 2.3 46.5 1.0 O L:THR168 2.3 39.1 1.0 OD1 L:ASP172 2.4 46.6 1.0 OD2 K:ASP96 2.6 47.0 1.0 OG1 L:THR168 2.7 44.1 1.0 O K:ASP96 2.9 37.1 1.0 C L:THR168 3.4 35.6 1.0 CB L:SER174 3.4 43.0 1.0 C L:PHE170 3.5 39.0 1.0 CG L:ASP172 3.6 49.7 1.0 CG K:ASP96 3.8 46.3 1.0 C K:ASP96 3.9 35.1 1.0 CB L:THR168 3.9 39.0 1.0 N L:PHE170 4.0 37.9 1.0 OD2 L:ASP172 4.0 54.3 1.0 CA L:THR168 4.1 32.0 1.0 N L:ASP172 4.1 39.9 1.0 C L:SER169 4.2 35.1 1.0 N L:THR168 4.3 30.5 1.0 N L:SER174 4.3 40.2 1.0 CA L:PHE170 4.3 34.8 1.0 N L:SER169 4.4 33.5 1.0 CA L:SER174 4.5 38.5 1.0 N L:VAL171 4.5 35.1 1.0 OD1 K:ASP96 4.6 55.2 1.0 CA K:ASP96 4.6 33.6 1.0 O L:SER169 4.6 40.4 1.0 CA L:VAL171 4.7 30.9 1.0 CA K:LEU97 4.7 29.7 1.0 CA L:SER169 4.7 30.4 1.0 N K:LEU97 4.7 35.0 1.0 CB L:ASP172 4.8 41.0 1.0 CB K:ASP96 4.8 35.4 1.0 CA L:ASP172 4.8 35.4 1.0 O K:LEU97 4.9 33.4 1.0 C L:VAL171 4.9 39.5 1.0 CB L:PHE170 5.0 35.6 1.0

G.L.Burn, T.Raisch, S.Tacke, M.Winkler, D.Prumbaum, S.Thee, S.Raunser, A.Zychlinsky. Myeloperoxidase Transforms Chromatin Into Neutrophil Extracellular Traps To Be Published.