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Calcium in PDB 9ger: Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle, Intermediate State; Composite Map

Other elements in 9ger:

The structure of Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle, Intermediate State; Composite Map also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle, Intermediate State; Composite Map (pdb code 9ger). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle, Intermediate State; Composite Map, PDB code: 9ger:

Calcium binding site 1 out of 1 in 9ger

Go back to Calcium Binding Sites List in 9ger
Calcium binding site 1 out of 1 in the Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle, Intermediate State; Composite Map


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle, Intermediate State; Composite Map within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ca603

b:68.9
occ:1.00
OG1 L:THR168 2.3 51.5 1.0
OG L:SER174 2.4 64.5 1.0
O L:THR168 2.4 51.5 1.0
O L:PHE170 2.6 52.4 1.0
OD1 L:ASP172 2.8 55.3 1.0
OD2 K:ASP96 3.0 48.5 1.0
CB L:SER174 3.1 64.5 1.0
C L:THR168 3.3 51.5 1.0
CB L:THR168 3.6 51.5 1.0
C L:PHE170 3.8 52.4 1.0
CA L:THR168 3.8 51.5 1.0
O K:ASP96 3.9 48.5 1.0
CG L:ASP172 4.0 55.3 1.0
N L:THR168 4.1 51.5 1.0
CG K:ASP96 4.2 48.5 1.0
N L:PHE170 4.3 52.4 1.0
N L:SER169 4.3 53.1 1.0
N L:ASP172 4.3 55.3 1.0
CG2 L:THR168 4.4 51.5 1.0
CA L:SER174 4.4 64.5 1.0
C L:SER169 4.4 53.1 1.0
N L:SER174 4.4 64.5 1.0
OD2 L:ASP172 4.5 55.3 1.0
CA L:PHE170 4.6 52.4 1.0
OD1 K:ASP96 4.7 48.5 1.0
CA L:SER169 4.7 53.1 1.0
N L:VAL171 4.7 51.3 1.0
C K:ASP96 4.8 48.5 1.0
O L:SER169 4.8 53.1 1.0
CA L:VAL171 4.8 51.3 1.0
C L:LEU167 4.9 53.6 1.0

Reference:

G.L.Burn, T.Raisch, S.Tacke, M.Winkler, D.Prumbaum, S.Thee, S.Raunser, A.Zychlinsky. Myeloperoxidase Transforms Chromatin Into Neutrophil Extracellular Traps To Be Published.
Page generated: Fri Aug 22 22:36:26 2025

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